diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 51bd099..3858d08 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -1,13 +1,13 @@ # This workflow will install Python dependencies, run tests and lint with a variety of Python versions # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions -name: Python package +name: Tests on: push: - branches: [ master ] + branches: '**' pull_request: - branches: [ master ] + branches: '**' jobs: build: @@ -27,6 +27,7 @@ jobs: run: | python -m pip install --upgrade pip setuptools wheel pip install flake8 pytest + pip install coverage if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - name: Lint with flake8 run: | @@ -34,7 +35,20 @@ jobs: flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - - name: Test with pytest + - name: Test with pytest and coverage run: | - pip install pytest - python -m pytest + coverage run -m pytest + coverage report -m | tee coverage.txt + coverage html + - name: Upload coverage to https://codecov.io/gh/jensengroup/propka + run: bash <(curl -s https://codecov.io/bash) + - name: Store coverage text results + uses: actions/upload-artifact@v2 + with: + name: coverage-text + path: coverage.txt + - name: Store coverage HTML results + uses: actions/upload-artifact@v2 + with: + name: coverage-html + path: htmlcov/* diff --git a/README.md b/README.md index 4f24163..69b71a5 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,7 @@ # PROPKA 3 +![Tests](https://github.com/jensengroup/propka/workflows/Tests/badge.svg) + PROPKA predicts the pKa values of ionizable groups in proteins (version 3.0) and protein-ligand complexes (version 3.1 and later) based on the 3D structure.