Initial removal of PROPKA input
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@@ -78,8 +78,6 @@ def run_propka(options, pdb_path, tmp_path):
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molecule = read_molecule_file(str(pdb_path), molecule)
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molecule.calculate_pka()
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molecule.write_pka()
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if args.generate_propka_input:
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molecule.write_propka()
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finally:
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os.chdir(cwd)
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