Remove TODO for refactoring.
Done already.
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@@ -2,15 +2,6 @@
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import math
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# TODO - this file should be broken into three separate files:
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# * calculations.py - includes basic functions for calculating distances, etc.
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# * hydrogen.py - includes bonding and protonation functions
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# * energy.py - includes energy functions (dependent on distance functions)
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# TODO - the next set of functions form a distinct "module" for distance calculation
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# Maximum distance used to bound calculations of smallest distance
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MAX_DISTANCE = 1e6
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