remove unused command
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@@ -12,8 +12,7 @@ protein-ligand complexes based in the 3D structure. The
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propka3 [-h] [-f FILENAMES] [-r REFERENCE] [-c CHAINS] [-i TITRATE_ONLY] [-t THERMOPHILES] [-a ALIGNMENT] [-m MUTATIONS]
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[-v VERSION_LABEL] [-p PARAMETERS] [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL}] [-o PH] [-w WINDOW WINDOW WINDOW]
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[-g GRID GRID GRID] [--mutator MUTATOR] [--mutator-option MUTATOR_OPTIONS] [-d] [-l] [-k] [-q] [--generate-propka-input]
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[--protonate-all]
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[-g GRID GRID GRID] [--mutator MUTATOR] [--mutator-option MUTATOR_OPTIONS] [-d] [-l] [-k] [-q] [--protonate-all]
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input_pdb
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@@ -120,10 +119,6 @@ protein-ligand complexes based in the 3D structure. The
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suppress non-warning messages (default: None)
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.. option:: --generate-propka-input
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Generate a PROPKA input file (default: False)
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.. option:: --protonate-all
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Protonate all atoms (will not influence pKa calculation)
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