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Merge remote-tracking branch 'origin/nathan/argpase' into nathan/tests

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Nathan Baker
2020-05-23 08:25:24 -07:00
parent ebddfa1f9f a49015c297
commit 0b4241cce6
1 changed files with 6 additions and 2 deletions
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8
propka/lib.py
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@@ -185,8 +185,12 @@ def build_parser(parser=None):
group.add_argument("-p", "--parameters", dest="parameters", group.add_argument("-p", "--parameters", dest="parameters",
default=pkg_resources.resource_filename(__name__, "propka.cfg"), default=pkg_resources.resource_filename(__name__, "propka.cfg"),
help="set the parameter file [%(default)s]") help="set the parameter file [%(default)s]")
group.add_argument("--log-level", choices=["DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"], try:
help="logging level verbosity", default="INFO") group.add_argument("--log-level", choices=["DEBUG", "INFO", "WARNING", "ERROR", "CRITICAL"],
help="logging level verbosity", default="INFO")
except argparse.ArgumentError:
# It is possible that --log-level has already been set by APBS
pass
group.add_argument("-o", "--pH", dest="pH", type=float, default=7.0, group.add_argument("-o", "--pH", dest="pH", type=float, default=7.0,
help="setting pH-value used in e.g. stability calculations [7.0]") help="setting pH-value used in e.g. stability calculations [7.0]")
group.add_argument("-w", "--window", dest="window", nargs=3, type=float, group.add_argument("-w", "--window", dest="window", nargs=3, type=float,