link to the propka3 command page
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Quickstart Guide
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==================
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PROPKA can be used either as a module or via the installed script :program:`propka3`; i.e., either
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PROPKA can be used either via the installed script :program:`propka3`
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or as a Python module. When using the :ref:`propka3-command`, use
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.. code-block:: bash
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propka3
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propka3 FILENAME
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or :mod:`propka`
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As a module (:mod:`propka`), also provide the input filename
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.. code-block:: bash
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python -m propka
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python -m propka FILENAME
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works for invoking PROPKA.
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In both cases, additional options may be added, as described in more
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detail for the :ref:`propka3-command`.
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Predicting protein residue |pKa| values
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