Files
prodigy/DEVELOPMENT.md
Olamide Isreal 19fd443501
Some checks failed
ci / test (3.10) (push) Has been cancelled
ci / test (3.11) (push) Has been cancelled
ci / test (3.12) (push) Has been cancelled
ci / test (3.13) (push) Has been cancelled
ci / test (3.9) (push) Has been cancelled
Configure PRODIGY pipeline for WES execution with S3 and Harbor
2026-03-17 16:38:16 +01:00

734 B

PRODIGY Development

Installation

We use poetry to manage the dependencies and the virtual environment, so you need to install it first; check the official documentation for more details.

Clone the repository and install the dependencies:

git clone https://github.com/haddocking/prodigy.git && cd prodigy
poetry install

Testing

To run the tests, use the following command:

python -m unittest

Code style

We use trunk as the "all-purpose" linting tool, check its documentation.

To check for code style issues, run:

trunk check

To automatically fix the issues, run:

trunk fmt