Configure PRODIGY pipeline for WES execution with S3 and Harbor

CITATION.cff

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+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: Prodigy
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: Anna
+    family-names: Vangone
+    affiliation: Utrecht University
+  - given-names: Alexandre
+    name-particle: MJJ
+    family-names: Bonvin
+    affiliation: Utrecht University
+  - given-names: Joerg
+    family-names: Schaarschmidt
+    affiliation: Utrecht University
+  - given-names: Rodrigo
+    family-names: Vargas Honorato
+    affiliation: Utrecht University
+  - given-names: Brian
+    family-names: Jimenez
+    affiliation: Utrecht University
+  - given-names: Joao
+    family-names: Rodrigues
+    affiliation: Utrecht University
+identifiers:
+  - type: doi
+    value: 10.1093/bioinformatics/btw514
+    description: DOI of the web service version
+  - type: doi
+    value: 10.7554/eLife.07454
+  - type: doi
+    value: 10.1016/j.jmb.2014.04.017
+repository-code: 'https://github.com/haddocking/prodigy'
+url: 'https://wenmr.science.uu.nl/prodigy'
+abstract: >-
+  A tool to predict binding affinity values for
+  protein-protein complexes from atomic structures.
+keywords:
+  - binding affinity
+  - computational biology
+  - protein-protein
+license: Apache-2.0