Configure PRODIGY pipeline for WES execution with S3 and Harbor

.github/workflows/stale.yml

@@ -0,0 +1,27 @@
+name: "Close stale issues and PRs"
+on:
+  schedule:
+    - cron: "30 1 * * *"
+  workflow_dispatch:
+
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
+      actions: write
+    steps:
+      - uses: actions/stale@v10
+        with:
+          stale-pr-message: "This PR is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days."
+          stale-issue-message: "This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days."
+          close-pr-message: 'This PR was closed because it has been stalled for 5 days with no activity.'
+          close-issue-message: 'This issue was closed because it has been stalled for 5 days with no activity.'
+          days-before-stale: 30
+          days-before-close: 5
+          exempt-issue-labels: "bug"
+          exempt-pr-labels: "bug"
+          remove-stale-when-updated: true
+          operations-per-run: 100