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prodigy/.github/workflows/ci.yml
Olamide Isreal 19fd443501
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Configure PRODIGY pipeline for WES execution with S3 and Harbor
2026-03-17 16:38:16 +01:00

50 lines
1.1 KiB
YAML

name: ci
on: push
jobs:
test:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
fail-fast: false
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- run: pip install '.[dev]'
- name: check types
run: mypy .
- name: run unittests
run: >-
pytest
-m "not integration"
--cov
--cov-report xml:coverage.xml
--cov-append
-vv
--hypothesis-show-statistics
- name: run integration tests
run: >-
pytest
-m integration
--cov
--cov-report xml:coverage.xml
--cov-append
-vv
--hypothesis-show-statistics
- name: Run codacy-coverage-reporter
uses: codacy/codacy-coverage-reporter-action@v1
with:
project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
coverage-reports: coverage.xml