// Manifest for Nextflow metadata
manifest {
    name = 'pocketminer-Nextflow'
    author = 'Olamide'
    homePage = 'https://github.com/Mickdub/gvp'
    description = 'Nextflow pipeline for PocketMiner - cryptic binding pocket prediction using geometric deep learning'
    mainScript = 'main.nf'
    version = '1.0.0'
}

// S3/MinIO plugin for direct S3 access (bypasses PVC mount issues)
plugins {
    id 'nf-amazon'
}

aws {
    client {
        endpoint = 'http://datalake-hl.datalake.svc.cluster.local:9000'
        s3PathStyleAccess = true
    }
}

// Global default parameters
params {
    pdb = "s3://omic/eureka/Pocketminer/1HSG.pdb"
    outdir = "s3://omic/eureka/Pocketminer/output"
    debug = false
}

// Profiles for different execution environments
profiles {
    standard {
        docker {
            enabled = true
            temp = 'auto'
        }
    }

    k8s {
        process {
            executor = 'k8s'
            container = 'harbor.cluster.omic.ai/omic/pocketminer:latest'
        }
        docker {
            enabled = true
        }
        k8s {
            storageClaimName = 'eureka-pvc'
            storageMountPath = '/omic/eureka'
        }
    }
}

// Process configurations
process {
    cpus = 2
    memory = '8 GB'
}