Configure ImmuneBuilder pipeline for WES execution

- Update container image to harbor.cluster.omic.ai/omic/immunebuilder:latest
- Update input/output paths to S3 (s3://omic/eureka/immunebuilder/)
- Remove local mount containerOptions (not needed in k8s)
- Update homepage to Gitea repo URL
- Clean history to remove large model weight blobs

setup.py

@@ -0,0 +1,29 @@
+from setuptools import setup, find_packages
+
+with open("README.md", "r", encoding="utf-8") as fh:
+    long_description = fh.read()
+
+setup(
+    name='ImmuneBuilder',
+    version='1.2',
+    description='Set of functions to predict the structure of immune receptor proteins',
+    license='BSD 3-clause license',
+    maintainer='Brennan Abanades',
+    long_description=long_description,
+    long_description_content_type='text/markdown',
+    maintainer_email='brennan.abanadeskenyon@stx.ox.ac.uk',
+    include_package_data=True,
+    packages=find_packages(include=('ImmuneBuilder', 'ImmuneBuilder.*')),
+    entry_points={'console_scripts': [
+        'ABodyBuilder2=ImmuneBuilder.ABodyBuilder2:command_line_interface',
+        'TCRBuilder2=ImmuneBuilder.TCRBuilder2:command_line_interface',
+        'NanoBodyBuilder2=ImmuneBuilder.NanoBodyBuilder2:command_line_interface',
+        ]},
+    install_requires=[
+        'numpy',
+        'scipy>=1.6',
+        'einops>=0.3',
+        'torch>=1.8',
+        'requests'
+    ],
+)