Configure ImmuneBuilder pipeline for WES execution
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CodeQL / Analyze (python) (push) Has been cancelled

- Update container image to harbor.cluster.omic.ai/omic/immunebuilder:latest
- Update input/output paths to S3 (s3://omic/eureka/immunebuilder/)
- Remove local mount containerOptions (not needed in k8s)
- Update homepage to Gitea repo URL
- Clean history to remove large model weight blobs
This commit is contained in:
2026-03-16 15:31:38 +01:00
commit 8887cbe592
49 changed files with 8741 additions and 0 deletions

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PDB,set
5d2l,train/val
4ozh,train/val
5d2n,train/val
3quy,train/val
6cug,train/val
2ypl,train/val
1kgc,train/val
5swz,train/val
5ks9,train/val
3rzc,train/val
5c07,train/val
4apq,train/val
6vqo,train/val
5wkf,train/val
5c08,train/val
7jwi,train/val
6fr9,train/val
5nme,train/val
5hyj,train/val
5u2v,train/val
6c61,train/val
7amr,train/val
4y2d,train/val
6vmx,train/val
6mjq,train/val
5ksa,train/val
4h1l,train/val
4l9l,train/val
5nmf,train/val
3tpu,train/val
3tvm,train/val
5wjo,train/val
3c6l,train/val
3qdm,train/val
6fr8,train/val
6d7g,train/val
3axl,train/val
3dxa,train/val
2cdg,train/val
6dfs,train/val
6xqp,train/val
6bnl,train/val
4l4v,train/val
1zgl,train/val
4pjd,train/val
6lir,train/val
6dfq,train/val
6rsy,train/val
6am5,train/val
3qiw,train/val
6vm9,train/val
6vma,train/val
6uz1,train/val
2vlj,train/val
6eqa,train/val
4p2q,train/val
4z7u,train/val
5u16,train/val
4pja,train/val
4nqe,train/val
3pqy,train/val
6avf,train/val
4y4h,train/val
5w1v,train/val
5sws,train/val
4mxq,train/val
6mj6,train/val
6dkp,train/val
4p46,train/val
5d7i,train/val
3sdd,train/val
7n1f,train/val
3d39,train/val
2e7l,train/val
2ian,train/val
4ndm,train/val
6vtc,train/val
6cxe,train/val
4pje,train/val
6r2l,train/val
3d3v,train/val
6eh9,train/val
6v80,train/val
6v0y,train/val
5w1w,train/val
2xna,train/val
3vxs,train/val
4z7w,train/val
6g9q,train/val
6cqn,train/val
2p1y,train/val
5d7j,train/val
4pj5,train/val
6fur,train/val
3utt,train/val
5c09,train/val
6fr5,train/val
5fka,train/val
3tf7,train/val
6dfw,train/val
4pri,train/val
6u3n,train/val
6puf,train/val
6rp9,train/val
4pji,train/val
3kxf,train/val
3sjv,train/val
4p5t,train/val
3w0w,train/val
1g6r,train/val
3rug,train/val
5til,train/val
3vwj,train/val
6avg,train/val
3vxq,train/val
4elk,train/val
2ial,train/val
4iiq,train/val
3huj,train/val
7n1d,train/val
4l4t,train/val
6fuo,train/val
5bs0,train/val
5nqk,train/val
3uts,train/val
3tjh,train/val
4grm,train/val
4x6c,train/val
4nqc,train/val
2vlm,train/val
6fr3,train/val
5euo,train/val
3ard,train/val
6fr4,train/val
1mwa,train/val
6miy,train/val
4may,train/val
5u1r,train/val
6at6,train/val
4qrp,train/val
1ypz,train/val
3skn,train/val
3e3q,train/val
3qeq,train/val
6u3o,train/val
4ww1,train/val
5m02,train/val
1kj2,train/val
4z7v,train/val
1lp9,train/val
6mnm,train/val
3qi9,train/val
5m01,train/val
4x6b,train/val
3o4l,train/val
4ozg,train/val
3mv7,train/val
6pud,train/val
6xqq,train/val
3rev,train/val
6eh6,train/val
4e42,train/val
2wbj,train/val
3vxu,train/val
3qjf,train/val
4y1a,train/val
5e9d,train/val
3he7,train/val
4lhu,train/val
7amq,train/val
3mbe,train/val
3e2h,train/val
2icw,train/val
2f54,train/val
4g8f,train/val
6cqr,train/val
4n0c,train/val
6cx5,train/val
6fra,train/val
4prp,train/val
3sda,train/val
6dfx,train/val
2pyf,train/val
5u17,train/val
2p5w,train/val
4pjh,train/val
6cx9,train/val
3kps,train/val
4ftv,train/val
3qeu,train/val
3mv8,train/val
4lcw,train/val
5l2k,train/val
5tje,train/val
3vxm,train/val
6mwr,train/val
3sdx,train/val
4jfd,train/val
4udt,train/val
4ozf,train/val
5c0c,train/val
2cdf,train/val
6rpb,train/val
1ymm,train/val
3vwk,train/val
6cwb,train/val
4pjg,train/val
7byd,train/val
4qok,train/val
3to4,train/val
5ivx,train/val
6vm8,train/val
2uwe,train/val
4mji,train/val
1hxm,train/val
6xco,train/val
3c60,train/val
1fyt,train/val
6frc,train/val
2p5e,train/val
6pul,train/val
3mv9,train/val
6ovo,train/val
2cde,train/val
2pxy,train/val
3o6f,train/val
7n6e,train/val
4prh,train/val
1nfd,train/val
3qdg,train/val
5e6i,train/val
4elm,train/val
2ak4,train/val
6pvd,train/val
5fk9,train/val
6puk,train/val
6l9l,train/val
6pue,train/val
6mno,train/val
7jwj,train/val
4pjc,train/val
4wwk,train/val
4c56,train/val
2q86,train/val
5c0a,train/val
4ei5,train/val
4udu,train/val
6vrm,train/val
3qh3,train/val
2nx5,train/val
6bj2,train/val
5nmg,train/val
4y4f,train/val
6ovn,train/val
5men,train/val
6mj4,train/val
3hg1,train/val
2f53,train/val
6xng,train/val
6mnn,train/val
1d9k,train/val
6xcp,train/val
5iw1,train/val
4pj7,train/val
6fuq,train/val
2z35,train/val
5hhm,train/val
2bnr,train/val
3qjh,train/val
3utp,train/val
7n1e,train/val
4irs,train/val
6fun,train/val
1qse,train/val
5u6q,train/val
3tyf,train/val
2po6,train/val
4ei6,train/val
2jcc,train/val
4jrx,train/val
1u3h,train/val
5wkh,train/val
6c68,train/val
4gg6,train/val
6mji,train/val
3sdc,train/val
6cph,train/val
6v1a,train/val
6cqq,train/val
6uln,train/val
4eup,train/val
3c5z,train/val
4pjb,train/val
6mng,train/val
3dx9,train/val
4e41,train/val
1bwm,train/val
3gsn,train/val
5d5m,train/val
6v13,train/val
4gg8,train/val
3pl6,train/val
4p2r,train/val
3arf,train/val
6eh5,train/val
7ea6,train/val
4jfe,train/val
6pvc,train/val
6mjj,train/val
6jxr,train/val
6puj,train/val
4dzb,train/val
3qiu,train/val
2j8u,train/val
7ams,train/val
2pye,train/val
5isz,train/val
2vlr,train/val
3mff,train/val
4ozi,train/val
6w9v,train/val
3are,train/val
4pj8,train/val
3qux,train/val
4mnh,train/val
6uon,train/val
2gj6,train/val
6dfv,train/val
6mkr,train/val
2eyt,train/val
2nw2,train/val
2ckb,train/val
6vth,train/val
4pjf,train/val
3vxt,train/val
6frb,train/val
6cw9,train/val
3qfj,train/val
6pum,train/val
3qdj,train/val
3tzv,train/val
4l3e,train/val
5u72,train/val
4pj9,train/val
2xn9,train/val
4g8e,train/val
7m72,train/val
6vm7,train/val
6eh7,train/val
6cw6,train/val
6cuh,train/val
6fr6,train/val
3ta3,train/val
6fum,train/val
6bnk,train/val
5nht,train/val
4nqd,train/val
6pug,train/val
4mnq,train/val
4zak,train/val
1qsf,train/val
5ksb,train/val
1oga,train/val
6cwe,train/val
4n5e,train/val
6bga,train/val
6vmc,train/val
4jff,train/val
5eu6,train/val
7ryl,train/val
4y19,train/val
3arb,train/val
6mtm,train/val
1tcr,train/val
6px6,train/val
5vcj,train/val
3qib,train/val
3h9s,train/val
6cxa,train/val
6w9u,train/val
3vxr,train/val
3rtq,train/val
2oi9,train/val
4x6d,train/val
6puh,train/val
4grl,train/val
2z31,train/val
6tmo,train/val
4p4k,train/val
4ww2,train/val
4p2o,train/val
3o9w,train/val
4lcc,train/val
5brz,train/val
3tn0,train/val
3arg,train/val
6mkd,train/val
6py2,train/val
4lfh,train/val
6rpa,train/val
2vlk,train/val
4ms8,train/val
3o8x,train/val
3t0e,train/val
4p23,train/val
3rdt,train/val
6tro,train/val
4en3,train/val
4jry,train/val
6mja,train/val
1ao7,train/val
4pjx,train/val
6q3s,train/val
6puc,train/val
1qrn,train/val
6eh8,train/val
2eys,train/val
2iam,train/val
6mss,train/val
4l8s,train/val
6fr7,train/val
4jfh,train/val
3kpr,train/val
3pwp,train/val
4mvb,train/val
7n1c,train/val
6omg,train/val
5c0b,train/val
6amu,train/val
7rym,train/val
3quz,train/val
3tfk,train/val
3he6,train/val
4irj,train/val
6d78,train/val
6cql,train/val
5m00,train/val
6miv,train/val
6v18,train/val
5wki,train/val
6eh4,train/val
2esv,train/val
1kb5,train/val
2bnq,train/val
6eqb,train/val
6ulr,train/val
6fup,train/val
1j8h,train/val
5nmd,train/val
3rgv,train/val
6pui,train/val
6v15,train/val
4zdh,train/val
2eyr,train/val
6v19,train/val
5hho,train/val
4gkz,train/val
2bnu,train/val
5tez,train/val
3scm,train/val
4onh,train/val
1mi5,train/val
6mra,train/val
7na5,test
7fjf,test
6zky,test
7pbe,test
7amp,test
7rrg,test
7n5p,test
7l1d,test
6zkz,test
7qpj,test
6zkx,test
7f5k,test
7r7z,test
7pb2,test
7n5c,test
7fjd,test
7r80,test
7z50,test
7su9,test
7dzm,test
7fje,test
1 PDB set
2 5d2l train/val
3 4ozh train/val
4 5d2n train/val
5 3quy train/val
6 6cug train/val
7 2ypl train/val
8 1kgc train/val
9 5swz train/val
10 5ks9 train/val
11 3rzc train/val
12 5c07 train/val
13 4apq train/val
14 6vqo train/val
15 5wkf train/val
16 5c08 train/val
17 7jwi train/val
18 6fr9 train/val
19 5nme train/val
20 5hyj train/val
21 5u2v train/val
22 6c61 train/val
23 7amr train/val
24 4y2d train/val
25 6vmx train/val
26 6mjq train/val
27 5ksa train/val
28 4h1l train/val
29 4l9l train/val
30 5nmf train/val
31 3tpu train/val
32 3tvm train/val
33 5wjo train/val
34 3c6l train/val
35 3qdm train/val
36 6fr8 train/val
37 6d7g train/val
38 3axl train/val
39 3dxa train/val
40 2cdg train/val
41 6dfs train/val
42 6xqp train/val
43 6bnl train/val
44 4l4v train/val
45 1zgl train/val
46 4pjd train/val
47 6lir train/val
48 6dfq train/val
49 6rsy train/val
50 6am5 train/val
51 3qiw train/val
52 6vm9 train/val
53 6vma train/val
54 6uz1 train/val
55 2vlj train/val
56 6eqa train/val
57 4p2q train/val
58 4z7u train/val
59 5u16 train/val
60 4pja train/val
61 4nqe train/val
62 3pqy train/val
63 6avf train/val
64 4y4h train/val
65 5w1v train/val
66 5sws train/val
67 4mxq train/val
68 6mj6 train/val
69 6dkp train/val
70 4p46 train/val
71 5d7i train/val
72 3sdd train/val
73 7n1f train/val
74 3d39 train/val
75 2e7l train/val
76 2ian train/val
77 4ndm train/val
78 6vtc train/val
79 6cxe train/val
80 4pje train/val
81 6r2l train/val
82 3d3v train/val
83 6eh9 train/val
84 6v80 train/val
85 6v0y train/val
86 5w1w train/val
87 2xna train/val
88 3vxs train/val
89 4z7w train/val
90 6g9q train/val
91 6cqn train/val
92 2p1y train/val
93 5d7j train/val
94 4pj5 train/val
95 6fur train/val
96 3utt train/val
97 5c09 train/val
98 6fr5 train/val
99 5fka train/val
100 3tf7 train/val
101 6dfw train/val
102 4pri train/val
103 6u3n train/val
104 6puf train/val
105 6rp9 train/val
106 4pji train/val
107 3kxf train/val
108 3sjv train/val
109 4p5t train/val
110 3w0w train/val
111 1g6r train/val
112 3rug train/val
113 5til train/val
114 3vwj train/val
115 6avg train/val
116 3vxq train/val
117 4elk train/val
118 2ial train/val
119 4iiq train/val
120 3huj train/val
121 7n1d train/val
122 4l4t train/val
123 6fuo train/val
124 5bs0 train/val
125 5nqk train/val
126 3uts train/val
127 3tjh train/val
128 4grm train/val
129 4x6c train/val
130 4nqc train/val
131 2vlm train/val
132 6fr3 train/val
133 5euo train/val
134 3ard train/val
135 6fr4 train/val
136 1mwa train/val
137 6miy train/val
138 4may train/val
139 5u1r train/val
140 6at6 train/val
141 4qrp train/val
142 1ypz train/val
143 3skn train/val
144 3e3q train/val
145 3qeq train/val
146 6u3o train/val
147 4ww1 train/val
148 5m02 train/val
149 1kj2 train/val
150 4z7v train/val
151 1lp9 train/val
152 6mnm train/val
153 3qi9 train/val
154 5m01 train/val
155 4x6b train/val
156 3o4l train/val
157 4ozg train/val
158 3mv7 train/val
159 6pud train/val
160 6xqq train/val
161 3rev train/val
162 6eh6 train/val
163 4e42 train/val
164 2wbj train/val
165 3vxu train/val
166 3qjf train/val
167 4y1a train/val
168 5e9d train/val
169 3he7 train/val
170 4lhu train/val
171 7amq train/val
172 3mbe train/val
173 3e2h train/val
174 2icw train/val
175 2f54 train/val
176 4g8f train/val
177 6cqr train/val
178 4n0c train/val
179 6cx5 train/val
180 6fra train/val
181 4prp train/val
182 3sda train/val
183 6dfx train/val
184 2pyf train/val
185 5u17 train/val
186 2p5w train/val
187 4pjh train/val
188 6cx9 train/val
189 3kps train/val
190 4ftv train/val
191 3qeu train/val
192 3mv8 train/val
193 4lcw train/val
194 5l2k train/val
195 5tje train/val
196 3vxm train/val
197 6mwr train/val
198 3sdx train/val
199 4jfd train/val
200 4udt train/val
201 4ozf train/val
202 5c0c train/val
203 2cdf train/val
204 6rpb train/val
205 1ymm train/val
206 3vwk train/val
207 6cwb train/val
208 4pjg train/val
209 7byd train/val
210 4qok train/val
211 3to4 train/val
212 5ivx train/val
213 6vm8 train/val
214 2uwe train/val
215 4mji train/val
216 1hxm train/val
217 6xco train/val
218 3c60 train/val
219 1fyt train/val
220 6frc train/val
221 2p5e train/val
222 6pul train/val
223 3mv9 train/val
224 6ovo train/val
225 2cde train/val
226 2pxy train/val
227 3o6f train/val
228 7n6e train/val
229 4prh train/val
230 1nfd train/val
231 3qdg train/val
232 5e6i train/val
233 4elm train/val
234 2ak4 train/val
235 6pvd train/val
236 5fk9 train/val
237 6puk train/val
238 6l9l train/val
239 6pue train/val
240 6mno train/val
241 7jwj train/val
242 4pjc train/val
243 4wwk train/val
244 4c56 train/val
245 2q86 train/val
246 5c0a train/val
247 4ei5 train/val
248 4udu train/val
249 6vrm train/val
250 3qh3 train/val
251 2nx5 train/val
252 6bj2 train/val
253 5nmg train/val
254 4y4f train/val
255 6ovn train/val
256 5men train/val
257 6mj4 train/val
258 3hg1 train/val
259 2f53 train/val
260 6xng train/val
261 6mnn train/val
262 1d9k train/val
263 6xcp train/val
264 5iw1 train/val
265 4pj7 train/val
266 6fuq train/val
267 2z35 train/val
268 5hhm train/val
269 2bnr train/val
270 3qjh train/val
271 3utp train/val
272 7n1e train/val
273 4irs train/val
274 6fun train/val
275 1qse train/val
276 5u6q train/val
277 3tyf train/val
278 2po6 train/val
279 4ei6 train/val
280 2jcc train/val
281 4jrx train/val
282 1u3h train/val
283 5wkh train/val
284 6c68 train/val
285 4gg6 train/val
286 6mji train/val
287 3sdc train/val
288 6cph train/val
289 6v1a train/val
290 6cqq train/val
291 6uln train/val
292 4eup train/val
293 3c5z train/val
294 4pjb train/val
295 6mng train/val
296 3dx9 train/val
297 4e41 train/val
298 1bwm train/val
299 3gsn train/val
300 5d5m train/val
301 6v13 train/val
302 4gg8 train/val
303 3pl6 train/val
304 4p2r train/val
305 3arf train/val
306 6eh5 train/val
307 7ea6 train/val
308 4jfe train/val
309 6pvc train/val
310 6mjj train/val
311 6jxr train/val
312 6puj train/val
313 4dzb train/val
314 3qiu train/val
315 2j8u train/val
316 7ams train/val
317 2pye train/val
318 5isz train/val
319 2vlr train/val
320 3mff train/val
321 4ozi train/val
322 6w9v train/val
323 3are train/val
324 4pj8 train/val
325 3qux train/val
326 4mnh train/val
327 6uon train/val
328 2gj6 train/val
329 6dfv train/val
330 6mkr train/val
331 2eyt train/val
332 2nw2 train/val
333 2ckb train/val
334 6vth train/val
335 4pjf train/val
336 3vxt train/val
337 6frb train/val
338 6cw9 train/val
339 3qfj train/val
340 6pum train/val
341 3qdj train/val
342 3tzv train/val
343 4l3e train/val
344 5u72 train/val
345 4pj9 train/val
346 2xn9 train/val
347 4g8e train/val
348 7m72 train/val
349 6vm7 train/val
350 6eh7 train/val
351 6cw6 train/val
352 6cuh train/val
353 6fr6 train/val
354 3ta3 train/val
355 6fum train/val
356 6bnk train/val
357 5nht train/val
358 4nqd train/val
359 6pug train/val
360 4mnq train/val
361 4zak train/val
362 1qsf train/val
363 5ksb train/val
364 1oga train/val
365 6cwe train/val
366 4n5e train/val
367 6bga train/val
368 6vmc train/val
369 4jff train/val
370 5eu6 train/val
371 7ryl train/val
372 4y19 train/val
373 3arb train/val
374 6mtm train/val
375 1tcr train/val
376 6px6 train/val
377 5vcj train/val
378 3qib train/val
379 3h9s train/val
380 6cxa train/val
381 6w9u train/val
382 3vxr train/val
383 3rtq train/val
384 2oi9 train/val
385 4x6d train/val
386 6puh train/val
387 4grl train/val
388 2z31 train/val
389 6tmo train/val
390 4p4k train/val
391 4ww2 train/val
392 4p2o train/val
393 3o9w train/val
394 4lcc train/val
395 5brz train/val
396 3tn0 train/val
397 3arg train/val
398 6mkd train/val
399 6py2 train/val
400 4lfh train/val
401 6rpa train/val
402 2vlk train/val
403 4ms8 train/val
404 3o8x train/val
405 3t0e train/val
406 4p23 train/val
407 3rdt train/val
408 6tro train/val
409 4en3 train/val
410 4jry train/val
411 6mja train/val
412 1ao7 train/val
413 4pjx train/val
414 6q3s train/val
415 6puc train/val
416 1qrn train/val
417 6eh8 train/val
418 2eys train/val
419 2iam train/val
420 6mss train/val
421 4l8s train/val
422 6fr7 train/val
423 4jfh train/val
424 3kpr train/val
425 3pwp train/val
426 4mvb train/val
427 7n1c train/val
428 6omg train/val
429 5c0b train/val
430 6amu train/val
431 7rym train/val
432 3quz train/val
433 3tfk train/val
434 3he6 train/val
435 4irj train/val
436 6d78 train/val
437 6cql train/val
438 5m00 train/val
439 6miv train/val
440 6v18 train/val
441 5wki train/val
442 6eh4 train/val
443 2esv train/val
444 1kb5 train/val
445 2bnq train/val
446 6eqb train/val
447 6ulr train/val
448 6fup train/val
449 1j8h train/val
450 5nmd train/val
451 3rgv train/val
452 6pui train/val
453 6v15 train/val
454 4zdh train/val
455 2eyr train/val
456 6v19 train/val
457 5hho train/val
458 4gkz train/val
459 2bnu train/val
460 5tez train/val
461 3scm train/val
462 4onh train/val
463 1mi5 train/val
464 6mra train/val
465 7na5 test
466 7fjf test
467 6zky test
468 7pbe test
469 7amp test
470 7rrg test
471 7n5p test
472 7l1d test
473 6zkz test
474 7qpj test
475 6zkx test
476 7f5k test
477 7r7z test
478 7pb2 test
479 7n5c test
480 7fjd test
481 7r80 test
482 7z50 test
483 7su9 test
484 7dzm test
485 7fje test