Configure ImmuneBuilder pipeline for WES execution
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- Update container image to harbor.cluster.omic.ai/omic/immunebuilder:latest - Update input/output paths to S3 (s3://omic/eureka/immunebuilder/) - Remove local mount containerOptions (not needed in k8s) - Update homepage to Gitea repo URL - Clean history to remove large model weight blobs
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.github/workflows/python-publish.yml
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28
.github/workflows/python-publish.yml
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name: Upload Python Package
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on:
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release:
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types: [created]
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jobs:
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deploy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: '3.x'
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install setuptools wheel twine
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- name: Build and publish
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env:
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TWINE_USERNAME: __token__
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TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
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run: |
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python setup.py sdist bdist_wheel
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twine upload dist/*
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