Configure ImmuneBuilder pipeline for WES execution
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- Update container image to harbor.cluster.omic.ai/omic/immunebuilder:latest
- Update input/output paths to S3 (s3://omic/eureka/immunebuilder/)
- Remove local mount containerOptions (not needed in k8s)
- Update homepage to Gitea repo URL
- Clean history to remove large model weight blobs
This commit is contained in:
2026-03-16 15:31:38 +01:00
commit 8887cbe592
49 changed files with 8741 additions and 0 deletions

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.github/workflows/python-publish.yml vendored Normal file
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name: Upload Python Package
on:
release:
types: [created]
jobs:
deploy:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install setuptools wheel twine
- name: Build and publish
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }}
run: |
python setup.py sdist bdist_wheel
twine upload dist/*