omic/foldseek
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839f2c1ed152a400b7693d6b299832d305a51493
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4 Commits

Author SHA1 Message Date
omic
839f2c1ed1 Mount the omic-reference volume instead of the removed eureka-pvc claim. 2026-09-25 00:06:06 +00:00
Olamide Isreal
704f048c59 Reduce resource requirements to 2 cpus / 8GB memory for k8s compatibility 2026-03-30 21:18:14 +01:00
Olamide Isreal
bf04f8971e Configure foldseek pipeline for WES execution 
- Update container image to harbor.cluster.omic.ai/omic/foldseek:latest
- Update default paths to /omic/eureka/foldseek/ PVC mount paths
- Add k8s profile with eureka-pvc storage
- Remove stageInMode copy and containerOptions for k8s compatibility
- Update params.json defaults to s3://omic/eureka/foldseek/ paths
 2026-03-30 20:54:07 +01:00
Olamide Isreal
ec54fa1c22 Initialize foldseek pipeline for WES 2026-03-30 19:21:29 +01:00