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flowdock/configs/paths/default.yaml
Olamide Isreal a3ffec6a07
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Initial commit: FlowDock pipeline configured for WES execution
2026-03-16 15:23:29 +01:00

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YAML

# path to root directory
# this requires PROJECT_ROOT environment variable to exist
# you can replace it with "." if you want the root to be the current working directory
root_dir: ${oc.env:PROJECT_ROOT}
# path to data directory
data_dir: ${paths.root_dir}/data/
# path to logging directory
log_dir: ${paths.root_dir}/logs/
# path to output directory, created dynamically by hydra
# path generation pattern is specified in `configs/hydra/default.yaml`
# use it to store all files generated during the run, like ckpts and metrics
output_dir: ${hydra:runtime.output_dir}
# path to working directory
work_dir: ${hydra:runtime.cwd}
# path to the directory containing the model checkpoints
ckpt_dir: ${paths.root_dir}/checkpoints/