Initial commit: FlowDock pipeline configured for WES execution

tests/test_configs.py

@@ -0,0 +1,37 @@
+import hydra
+from hydra.core.hydra_config import HydraConfig
+from omegaconf import DictConfig
+
+
+def test_train_config(cfg_train: DictConfig) -> None:
+    """Tests the training configuration provided by the `cfg_train` pytest fixture.
+
+    :param cfg_train: A DictConfig containing a valid training configuration.
+    """
+    assert cfg_train
+    assert cfg_train.data
+    assert cfg_train.model
+    assert cfg_train.trainer
+
+    HydraConfig().set_config(cfg_train)
+
+    hydra.utils.instantiate(cfg_train.data)
+    hydra.utils.instantiate(cfg_train.model)
+    hydra.utils.instantiate(cfg_train.trainer)
+
+
+def test_eval_config(cfg_eval: DictConfig) -> None:
+    """Tests the evaluation configuration provided by the `cfg_eval` pytest fixture.
+
+    :param cfg_train: A DictConfig containing a valid evaluation configuration.
+    """
+    assert cfg_eval
+    assert cfg_eval.data
+    assert cfg_eval.model
+    assert cfg_eval.trainer
+
+    HydraConfig().set_config(cfg_eval)
+
+    hydra.utils.instantiate(cfg_eval.data)
+    hydra.utils.instantiate(cfg_eval.model)
+    hydra.utils.instantiate(cfg_eval.trainer)