Initial commit: FlowDock pipeline configured for WES execution

tests/helpers/run_sh_command.py

@@ -0,0 +1,21 @@
+import pytest
+from beartype.typing import List
+
+from tests.helpers.package_available import _SH_AVAILABLE
+
+if _SH_AVAILABLE:
+    import sh
+
+
+def run_sh_command(command: List[str]) -> None:
+    """Default method for executing shell commands with `pytest` and `sh` package.
+
+    :param command: A list of shell commands as strings.
+    """
+    msg = None
+    try:
+        sh.python(command)
+    except sh.ErrorReturnCode as e:
+        msg = e.stderr.decode()
+    if msg:
+        pytest.fail(msg=msg)