Initial commit: FlowDock pipeline configured for WES execution

tests/helpers/package_available.py

@@ -0,0 +1,32 @@
+import platform
+
+import pkg_resources
+from lightning.fabric.accelerators import TPUAccelerator
+
+
+def _package_available(package_name: str) -> bool:
+    """Check if a package is available in your environment.
+
+    :param package_name: The name of the package to be checked.
+
+    :return: `True` if the package is available. `False` otherwise.
+    """
+    try:
+        return pkg_resources.require(package_name) is not None
+    except pkg_resources.DistributionNotFound:
+        return False
+
+
+_TPU_AVAILABLE = TPUAccelerator.is_available()
+
+_IS_WINDOWS = platform.system() == "Windows"
+
+_SH_AVAILABLE = not _IS_WINDOWS and _package_available("sh")
+
+_DEEPSPEED_AVAILABLE = not _IS_WINDOWS and _package_available("deepspeed")
+_FAIRSCALE_AVAILABLE = not _IS_WINDOWS and _package_available("fairscale")
+
+_WANDB_AVAILABLE = _package_available("wandb")
+_NEPTUNE_AVAILABLE = _package_available("neptune")
+_COMET_AVAILABLE = _package_available("comet_ml")
+_MLFLOW_AVAILABLE = _package_available("mlflow")