Initial commit: FlowDock pipeline configured for WES execution

configs/experiment/flowdock_fm.yaml

@@ -0,0 +1,35 @@
+# @package _global_
+
+# to execute this experiment run:
+# python train.py experiment=flowdock_fm
+
+defaults:
+  - override /data: combined
+  - override /model: flowdock_fm
+  - override /callbacks: default
+  - override /trainer: default
+
+# all parameters below will be merged with parameters from default configurations set above
+# this allows you to overwrite only specified parameters
+
+tags: ["flowdock_fm", "combined_dataset"]
+
+seed: 496
+
+trainer:
+  max_epochs: 300
+  check_val_every_n_epoch: 5 # NOTE: we increase this since validation steps involve full model sampling and evaluation
+  reload_dataloaders_every_n_epochs: 1
+
+model:
+  optimizer:
+    lr: 2e-4
+  compile: false
+
+data:
+  batch_size: 16
+
+logger:
+  wandb:
+    tags: ${tags}
+    group: "FlowDock-FM"