Initial commit: FlowDock pipeline configured for WES execution

2026-03-16 15:23:29 +01:00
commit a3ffec6a07
116 changed files with 16139 additions and 0 deletions
--- a/configs/debug/overfit.yaml
+++ b/configs/debug/overfit.yaml
@@ -0,0 +1,13 @@
+# @package _global_
+
+# overfits to 3 batches
+
+defaults:
+  - default
+
+trainer:
+  max_epochs: 20
+  overfit_batches: 3
+
+# model ckpt and early stopping need to be disabled during overfitting
+callbacks: null