Initial commit: FlowDock pipeline configured for WES execution

Makefile

@@ -0,0 +1,30 @@
+
+help:  ## Show help
+	@grep -E '^[.a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[36m%-30s\033[0m %s\n", $$1, $$2}'
+
+clean: ## Clean autogenerated files
+	rm -rf dist
+	find . -type f -name "*.DS_Store" -ls -delete
+	find . | grep -E "(__pycache__|\.pyc|\.pyo)" | xargs rm -rf
+	find . | grep -E ".pytest_cache" | xargs rm -rf
+	find . | grep -E ".ipynb_checkpoints" | xargs rm -rf
+	rm -f .coverage
+
+clean-logs: ## Clean logs
+	rm -rf logs/**
+
+format: ## Run pre-commit hooks
+	pre-commit run -a
+
+sync: ## Merge changes from main branch to your current branch
+	git pull
+	git pull origin main
+
+test: ## Run not slow tests
+	pytest -k "not slow"
+
+test-full: ## Run all tests
+	pytest
+
+train: ## Train the model
+	python flowdock/train.py