9e75f44f1a
Source-only snapshot of the cluster branch for WES execution. Large reference files (HPA/MANE/ensemble FASTA, model weights, ~597 MB) are omitted: they are baked into the container images at build time and mounted from the dreamdock-data PVC at runtime, and exceed the Gitea request size limit. Pipeline entry point is main.nf, which orchestrates the biotransformer, conplex and tissue modules as a single workflow. Ligand inputs are read from the eureka workspace; protein_zarr and chembl_db come from the dreamdock-data PVC.
23 lines
500 B
Plaintext
Executable File
23 lines
500 B
Plaintext
Executable File
nextflow.enable.dsl=2
|
|
|
|
|
|
process TISSUE_DISTRIBUTION {
|
|
container "${params.container_tissue}"
|
|
containerOptions "${params.containerOptions}"
|
|
publishDir "${params.outdir}/${params.project_name}/tissue_distribution", mode: 'copy'
|
|
debug true
|
|
|
|
input:
|
|
path interaction
|
|
|
|
output:
|
|
path "*tissue_distribution.tsv", emit: tissue_dist
|
|
|
|
script:
|
|
"""
|
|
. activate tissue
|
|
|
|
python3 /home/omic/drug_tissue_distribution.py --file_name ${interaction}
|
|
"""
|
|
}
|