FROM mambaorg/micromamba:2.1.1

USER root

ARG MAMBA_DOCKERFILE_ACTIVATE=1

RUN micromamba install -n base -y -c conda-forge -c bioconda --channel-priority flexible \
        python=3.12 \
        numpy \
        pandas \
        scipy \
        r-base=4.3 \
        bioconductor-stringdb \
        r-tidyverse \
        r-argparser \
        r-sqldf \
        r-rsqlite \
        r-argparse \
        procps-ng

COPY ./app_network /app