Mar-23 12:31:42.184 [main] DEBUG nextflow.cli.Launcher - $> nextflow run test.nf -params-file /data/runs/R01-caline-nac_similar/J02-digtrial/params.json Mar-23 12:31:42.570 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 25.04.3 Mar-23 12:31:42.599 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/omic/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.0,nf-k8s@1.0.0,nf-tower@1.11.3,nf-wave@1.12.1 Mar-23 12:31:42.635 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] Mar-23 12:31:42.636 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] Mar-23 12:31:42.639 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode Mar-23 12:31:42.653 [main] INFO org.pf4j.AbstractPluginManager - No plugins Mar-23 12:31:42.679 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: /data/bugra/digital_trials/nextflow.config Mar-23 12:31:42.682 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /data/bugra/digital_trials/nextflow.config Mar-23 12:31:42.722 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/omic/.nextflow/secrets/store.json Mar-23 12:31:42.727 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@6ef81f31] - activable => nextflow.secret.LocalSecretsProvider@6ef81f31 Mar-23 12:31:42.756 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard` Mar-23 12:31:43.516 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declaration Mar-23 12:31:43.541 [main] DEBUG nextflow.cli.CmdRun - Launching `test.nf` [distraught_dijkstra] DSL2 - revision: 0e14afbd94 Mar-23 12:31:43.543 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] Mar-23 12:31:43.544 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-tower@1.11.3] Mar-23 12:31:43.547 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-tower version: 1.11.3 Mar-23 12:31:43.560 [main] INFO org.pf4j.AbstractPluginManager - Plugin 'nf-tower@1.11.3' resolved Mar-23 12:31:43.561 [main] INFO org.pf4j.AbstractPluginManager - Start plugin 'nf-tower@1.11.3' Mar-23 12:31:43.580 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-tower@1.11.3 Mar-23 12:31:43.662 [main] DEBUG nextflow.Session - Session UUID: df1066b0-f8aa-4422-8387-039b7127dc16 Mar-23 12:31:43.663 [main] DEBUG nextflow.Session - Run name: distraught_dijkstra Mar-23 12:31:43.664 [main] DEBUG nextflow.Session - Executor pool size: 80 Mar-23 12:31:43.677 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null Mar-23 12:31:43.686 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=240; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false Mar-23 12:31:43.723 [main] DEBUG nextflow.cli.CmdRun - Version: 25.04.3 build 5949 Created: 02-06-2025 20:56 UTC System: Linux 6.11.0-26-generic Runtime: Groovy 4.0.26 on OpenJDK 64-Bit Server VM 21.0.7+6-Ubuntu-0ubuntu124.04 Encoding: UTF-8 (UTF-8) Process: 3209064@k8s-node23 [127.0.1.1] CPUs: 80 - Mem: 251.6 GB (174.9 GB) - Swap: 0 (0) Mar-23 12:31:43.756 [main] DEBUG nextflow.Session - Work-dir: /data/bugra/digital_trials/work [btrfs] Mar-23 12:31:43.757 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /data/bugra/digital_trials/bin Mar-23 12:31:43.773 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[] Mar-23 12:31:43.789 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory Mar-23 12:31:43.795 [main] DEBUG nextflow.Session - Observer factory: TowerFactory Mar-23 12:31:43.798 [main] DEBUG nextflow.Session - Observer factory (v2): LinObserverFactory Mar-23 12:31:43.832 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory Mar-23 12:31:43.844 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 81; maxThreads: 1000 Mar-23 12:31:44.024 [main] DEBUG nextflow.Session - Session start Mar-23 12:31:44.500 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution Mar-23 12:31:45.370 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.371 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.378 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local Mar-23 12:31:45.388 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=80; memory=251.6 GB; capacity=80; pollInterval=100ms; dumpInterval=5m Mar-23 12:31:45.391 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local) Mar-23 12:31:45.425 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'HUMAN_TRANSFORMER': maxForks=0; fair=false; array=0 Mar-23 12:31:45.535 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.536 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.538 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'GET_FINAL_METABOLITES_STATIC': maxForks=0; fair=false; array=0 Mar-23 12:31:45.551 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:gpu_process` matches labels `gpu_process` for process with name PREPROCESS_PROTEIN Mar-23 12:31:45.556 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.556 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.558 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'PREPROCESS_PROTEIN': maxForks=0; fair=false; array=0 Mar-23 12:31:45.616 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.616 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.617 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'CONPLEX_ALL': maxForks=0; fair=false; array=0 Mar-23 12:31:45.648 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.648 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.649 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NETWORK_ENRICHMENT': maxForks=0; fair=false; array=0 Mar-23 12:31:45.657 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.657 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.658 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'TISSUE_DISTRIBUTION': maxForks=0; fair=false; array=0 Mar-23 12:31:45.669 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null Mar-23 12:31:45.669 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' Mar-23 12:31:45.670 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'BIO_METRICS': maxForks=0; fair=false; array=0 Mar-23 12:31:45.673 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: HUMAN_TRANSFORMER, METABOLITES_BY_MASS, GET_FINAL_METABOLITES_STATIC, CONPLEX_ALL, NETWORK_ENRICHMENT, GET_FINAL_METABOLITES, CONPLEX, BIO_METRICS, SUPER_TRANSFORMER, TISSUE_DISTRIBUTION, MERGE_DRUG, MERGE_INTERACTIONS, PREPROCESS_PROTEIN, ORDERED_SEQUENCE Mar-23 12:31:45.676 [main] DEBUG nextflow.Session - Igniting dataflow network (11) Mar-23 12:31:45.683 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > HUMAN_TRANSFORMER Mar-23 12:31:45.684 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > GET_FINAL_METABOLITES_STATIC Mar-23 12:31:45.685 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > PREPROCESS_PROTEIN Mar-23 12:31:45.686 [PathVisitor-3] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: /mnt/dreamdock-data/digital_trials/input/blank/; pattern: *.fasta; options: [:] Mar-23 12:31:45.686 [PathVisitor-1] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: /data/runs/R01-caline-nac_similar/input/ligands/; pattern: *.csv; options: [:] Mar-23 12:31:45.686 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > CONPLEX_ALL Mar-23 12:31:45.687 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NETWORK_ENRICHMENT Mar-23 12:31:45.687 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > TISSUE_DISTRIBUTION Mar-23 12:31:45.688 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BIO_METRICS Mar-23 12:31:45.689 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files: Script_d345b7a65a8f3255: /data/bugra/digital_trials/main_conplex.nf Script_ec2c89c0dbf76553: /data/bugra/digital_trials/test.nf Script_e613579b607a4f34: /data/bugra/digital_trials/main_biotransformer.nf Script_ec01f2a38db15aa5: /data/bugra/digital_trials/main_tissue.nf Mar-23 12:31:45.689 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination Mar-23 12:31:45.689 [main] DEBUG nextflow.Session - Session await Mar-23 12:31:45.997 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.000 [Task submitter] INFO nextflow.Session - [11/907b6d] Submitted process > HUMAN_TRANSFORMER (27) Mar-23 12:31:46.011 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.012 [Task submitter] INFO nextflow.Session - [dc/09507c] Submitted process > HUMAN_TRANSFORMER (20) Mar-23 12:31:46.018 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.019 [Task submitter] INFO nextflow.Session - [20/1a7d4d] Submitted process > HUMAN_TRANSFORMER (17) Mar-23 12:31:46.025 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.025 [Task submitter] INFO nextflow.Session - [ae/d4edcb] Submitted process > HUMAN_TRANSFORMER (21) Mar-23 12:31:46.030 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.031 [Task submitter] INFO nextflow.Session - [66/85b2c7] Submitted process > HUMAN_TRANSFORMER (23) Mar-23 12:31:46.037 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.037 [Task submitter] INFO nextflow.Session - [f7/f16540] Submitted process > HUMAN_TRANSFORMER (2) Mar-23 12:31:46.042 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.042 [Task submitter] INFO nextflow.Session - [f1/b1e309] Submitted process > HUMAN_TRANSFORMER (16) Mar-23 12:31:46.047 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.048 [Task submitter] INFO nextflow.Session - [1e/26e912] Submitted process > HUMAN_TRANSFORMER (14) Mar-23 12:31:46.053 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.053 [Task submitter] INFO nextflow.Session - [f3/2167e6] Submitted process > HUMAN_TRANSFORMER (4) Mar-23 12:31:46.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.059 [Task submitter] INFO nextflow.Session - [c2/2ce2ac] Submitted process > HUMAN_TRANSFORMER (1) Mar-23 12:31:46.065 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.065 [Task submitter] INFO nextflow.Session - [9c/107234] Submitted process > HUMAN_TRANSFORMER (22) Mar-23 12:31:46.070 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.071 [Task submitter] INFO nextflow.Session - [02/506940] Submitted process > HUMAN_TRANSFORMER (8) Mar-23 12:31:46.076 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.076 [Task submitter] INFO nextflow.Session - [35/b8dc93] Submitted process > HUMAN_TRANSFORMER (9) Mar-23 12:31:46.081 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.081 [Task submitter] INFO nextflow.Session - [8f/b72148] Submitted process > HUMAN_TRANSFORMER (5) Mar-23 12:31:46.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.086 [Task submitter] INFO nextflow.Session - [9e/68d27c] Submitted process > HUMAN_TRANSFORMER (19) Mar-23 12:31:46.090 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.090 [Task submitter] INFO nextflow.Session - [ce/eac613] Submitted process > HUMAN_TRANSFORMER (7) Mar-23 12:31:46.095 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.096 [Task submitter] INFO nextflow.Session - [88/d6f61a] Submitted process > HUMAN_TRANSFORMER (11) Mar-23 12:31:46.100 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.100 [Task submitter] INFO nextflow.Session - [de/d2b3da] Submitted process > HUMAN_TRANSFORMER (10) Mar-23 12:31:46.105 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.106 [Task submitter] INFO nextflow.Session - [85/3e7894] Submitted process > HUMAN_TRANSFORMER (13) Mar-23 12:31:46.128 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.129 [Task submitter] INFO nextflow.Session - [58/5a1016] Submitted process > HUMAN_TRANSFORMER (32) Mar-23 12:31:46.135 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.136 [Task submitter] INFO nextflow.Session - [d7/93d38d] Submitted process > HUMAN_TRANSFORMER (29) Mar-23 12:31:46.142 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.143 [Task submitter] INFO nextflow.Session - [d6/937a35] Submitted process > HUMAN_TRANSFORMER (12) Mar-23 12:31:46.149 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.150 [Task submitter] INFO nextflow.Session - [e1/2d650b] Submitted process > HUMAN_TRANSFORMER (25) Mar-23 12:31:46.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.155 [Task submitter] INFO nextflow.Session - [8c/614048] Submitted process > HUMAN_TRANSFORMER (28) Mar-23 12:31:46.160 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.161 [Task submitter] INFO nextflow.Session - [a7/55cb6c] Submitted process > HUMAN_TRANSFORMER (31) Mar-23 12:31:46.166 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.167 [Task submitter] INFO nextflow.Session - [7f/fffcfc] Submitted process > HUMAN_TRANSFORMER (6) Mar-23 12:31:46.182 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.185 [Task submitter] INFO nextflow.Session - [1d/701bd0] Submitted process > HUMAN_TRANSFORMER (26) Mar-23 12:31:46.191 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.192 [Task submitter] INFO nextflow.Session - [9d/1c6085] Submitted process > HUMAN_TRANSFORMER (24) Mar-23 12:31:46.196 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.196 [Task submitter] INFO nextflow.Session - [ba/11e874] Submitted process > HUMAN_TRANSFORMER (30) Mar-23 12:31:46.200 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.201 [Task submitter] INFO nextflow.Session - [30/24835f] Submitted process > HUMAN_TRANSFORMER (18) Mar-23 12:31:46.206 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.206 [Task submitter] INFO nextflow.Session - [4f/522cdb] Submitted process > HUMAN_TRANSFORMER (15) Mar-23 12:31:46.213 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:31:46.214 [Task submitter] INFO nextflow.Session - [f8/10a61c] Submitted process > HUMAN_TRANSFORMER (3) Mar-23 12:32:26.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: HUMAN_TRANSFORMER (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/dc/09507c87b781fe02fdebde1b1c949d] Mar-23 12:32:26.207 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=240; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false Mar-23 12:32:26.290 [TaskFinalizer-1] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=240; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false Mar-23 12:32:26.374 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:26.375 [Task submitter] INFO nextflow.Session - [a9/6c5151] Submitted process > GET_FINAL_METABOLITES_STATIC (1) Mar-23 12:32:39.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: HUMAN_TRANSFORMER (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/c2/2ce2acf8a3662f1dc112d6f0f05ff9] Mar-23 12:32:39.893 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:39.894 [Task submitter] INFO nextflow.Session - [57/fc4060] Submitted process > GET_FINAL_METABOLITES_STATIC (2) Mar-23 12:32:44.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: GET_FINAL_METABOLITES_STATIC (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a9/6c51514dff4ffe92722c7cf24245b5] Mar-23 12:32:45.061 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:45.062 [Task submitter] INFO nextflow.Session - [a5/23b628] Submitted process > CONPLEX_ALL (1) Mar-23 12:32:49.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: GET_FINAL_METABOLITES_STATIC (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/57/fc4060cde07e37c3f0d31dfa56f1c7] Mar-23 12:32:49.510 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:49.510 [Task submitter] INFO nextflow.Session - [69/3bf75d] Submitted process > CONPLEX_ALL (2) Mar-23 12:32:54.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: HUMAN_TRANSFORMER (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9d/1c60859d50538fe14819139778987b] Mar-23 12:32:54.826 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:54.828 [Task submitter] INFO nextflow.Session - [ac/7afb43] Submitted process > GET_FINAL_METABOLITES_STATIC (3) Mar-23 12:32:58.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: HUMAN_TRANSFORMER (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/58/5a101692f7278fc7c1d861dc268944] Mar-23 12:32:58.855 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:32:58.856 [Task submitter] INFO nextflow.Session - [b9/353957] Submitted process > GET_FINAL_METABOLITES_STATIC (4) Mar-23 12:33:05.887 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: HUMAN_TRANSFORMER (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/66/85b2c748f0247fecfb2a6144d0ea85] Mar-23 12:33:05.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: HUMAN_TRANSFORMER (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/88/d6f61a8ea069829d5d3b8d2d6ed3d2] Mar-23 12:33:05.909 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:05.911 [Task submitter] INFO nextflow.Session - [8c/87d858] Submitted process > GET_FINAL_METABOLITES_STATIC (6) Mar-23 12:33:05.923 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:05.924 [Task submitter] INFO nextflow.Session - [8d/b292b1] Submitted process > GET_FINAL_METABOLITES_STATIC (5) Mar-23 12:33:07.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: HUMAN_TRANSFORMER (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ae/d4edcb9c1c862ea8272f42f2bd999d] Mar-23 12:33:07.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:07.968 [Task submitter] INFO nextflow.Session - [fa/28ee3d] Submitted process > GET_FINAL_METABOLITES_STATIC (7) Mar-23 12:33:09.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: GET_FINAL_METABOLITES_STATIC (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ac/7afb4318418e08d8f973b9ffbbcea5] Mar-23 12:33:09.263 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:09.264 [Task submitter] INFO nextflow.Session - [47/e3689c] Submitted process > CONPLEX_ALL (3) Mar-23 12:33:21.678 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: HUMAN_TRANSFORMER (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a7/55cb6cfd3954144d267fc883e9f71e] Mar-23 12:33:21.702 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:21.703 [Task submitter] INFO nextflow.Session - [33/e9e7e8] Submitted process > GET_FINAL_METABOLITES_STATIC (8) Mar-23 12:33:23.614 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: HUMAN_TRANSFORMER (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9e/68d27c8d1ee060a4836f615f8bc8b7] Mar-23 12:33:23.627 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:23.627 [Task submitter] INFO nextflow.Session - [aa/87ad5d] Submitted process > GET_FINAL_METABOLITES_STATIC (9) Mar-23 12:33:26.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: GET_FINAL_METABOLITES_STATIC (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/b9/35395791cb206f27e75128b0d43acf] Mar-23 12:33:26.286 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:26.286 [Task submitter] INFO nextflow.Session - [2b/1f832e] Submitted process > CONPLEX_ALL (4) Mar-23 12:33:28.739 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: HUMAN_TRANSFORMER (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8c/614048724953cdaf85576db432cb71] Mar-23 12:33:28.979 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:28.981 [Task submitter] INFO nextflow.Session - [e8/674830] Submitted process > GET_FINAL_METABOLITES_STATIC (10) Mar-23 12:33:30.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: GET_FINAL_METABOLITES_STATIC (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8c/87d858d63310846892df016cab7a7c] Mar-23 12:33:30.808 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:30.809 [Task submitter] INFO nextflow.Session - [11/41fa41] Submitted process > CONPLEX_ALL (5) Mar-23 12:33:34.201 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: HUMAN_TRANSFORMER (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4f/522cdbd6c71ca2b84a5c7c40c75be8] Mar-23 12:33:34.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:34.224 [Task submitter] INFO nextflow.Session - [07/e85ae9] Submitted process > GET_FINAL_METABOLITES_STATIC (11) Mar-23 12:33:34.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: GET_FINAL_METABOLITES_STATIC (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/fa/28ee3dc5d2854cb6ec7a06b2b077cd] Mar-23 12:33:34.349 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:34.350 [Task submitter] INFO nextflow.Session - [8a/d96785] Submitted process > CONPLEX_ALL (6) Mar-23 12:33:35.976 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: GET_FINAL_METABOLITES_STATIC (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8d/b292b16c812d7dfd6914291c9ea916] Mar-23 12:33:36.036 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:36.048 [Task submitter] INFO nextflow.Session - [dd/50d730] Submitted process > CONPLEX_ALL (7) Mar-23 12:33:50.315 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: HUMAN_TRANSFORMER (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/1d/701bd014e2b99ea7030776393f4d5e] Mar-23 12:33:50.355 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:50.356 [Task submitter] INFO nextflow.Session - [83/b74538] Submitted process > GET_FINAL_METABOLITES_STATIC (12) Mar-23 12:33:51.575 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: HUMAN_TRANSFORMER (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e1/2d650bd0b461beee593bbcf4146cd9] Mar-23 12:33:51.596 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:51.598 [Task submitter] INFO nextflow.Session - [33/3c10fd] Submitted process > GET_FINAL_METABOLITES_STATIC (13) Mar-23 12:33:54.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: HUMAN_TRANSFORMER (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/11/907b6d28da29bbd89e5d2ccfae4efa] Mar-23 12:33:54.429 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:54.430 [Task submitter] INFO nextflow.Session - [fc/8331ce] Submitted process > GET_FINAL_METABOLITES_STATIC (14) Mar-23 12:33:55.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: HUMAN_TRANSFORMER (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/85/3e7894d128f1a7ca4e512265de5963] Mar-23 12:33:55.787 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:55.789 [Task submitter] INFO nextflow.Session - [57/5023ee] Submitted process > GET_FINAL_METABOLITES_STATIC (15) Mar-23 12:33:56.685 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: GET_FINAL_METABOLITES_STATIC (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/33/e9e7e8904fe466f69f4df57cce2c64] Mar-23 12:33:56.708 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:33:56.709 [Task submitter] INFO nextflow.Session - [9a/2fecc9] Submitted process > CONPLEX_ALL (8) Mar-23 12:34:00.284 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: GET_FINAL_METABOLITES_STATIC (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/aa/87ad5d6b5867590135e05f76c3bb54] Mar-23 12:34:00.299 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:00.299 [Task submitter] INFO nextflow.Session - [f1/5e18e2] Submitted process > CONPLEX_ALL (9) Mar-23 12:34:01.320 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: GET_FINAL_METABOLITES_STATIC (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e8/67483098b1e320bd4b8f1a79daaa0d] Mar-23 12:34:01.339 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:01.554 [Task submitter] INFO nextflow.Session - [31/8a1dcd] Submitted process > CONPLEX_ALL (10) Mar-23 12:34:04.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: GET_FINAL_METABOLITES_STATIC (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/07/e85ae96b214083751ee72ad0a6bfb7] Mar-23 12:34:04.396 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:04.398 [Task submitter] INFO nextflow.Session - [de/729b43] Submitted process > CONPLEX_ALL (11) Mar-23 12:34:11.898 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: HUMAN_TRANSFORMER (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/1e/26e9125254af1d3a5deaa84c7d3811] Mar-23 12:34:11.920 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:11.921 [Task submitter] INFO nextflow.Session - [0e/b1ba67] Submitted process > GET_FINAL_METABOLITES_STATIC (16) Mar-23 12:34:19.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: GET_FINAL_METABOLITES_STATIC (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/fc/8331ce93639011dd35f13ae21ff3f7] Mar-23 12:34:19.907 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:19.908 [Task submitter] INFO nextflow.Session - [89/e57fd5] Submitted process > CONPLEX_ALL (12) Mar-23 12:34:19.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: GET_FINAL_METABOLITES_STATIC (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/83/b745382ed20b6665e5054177cdf014] Mar-23 12:34:20.422 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:20.423 [Task submitter] INFO nextflow.Session - [6b/d6191a] Submitted process > CONPLEX_ALL (13) Mar-23 12:34:21.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: HUMAN_TRANSFORMER (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8f/b72148545bcdcb9cab86e46a063bf2] Mar-23 12:34:21.662 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:21.663 [Task submitter] INFO nextflow.Session - [5f/c1a0dc] Submitted process > GET_FINAL_METABOLITES_STATIC (17) Mar-23 12:34:23.293 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: GET_FINAL_METABOLITES_STATIC (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/33/3c10fd8d2d91c9e47891327246402e] Mar-23 12:34:23.307 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:23.308 [Task submitter] INFO nextflow.Session - [27/4e94a8] Submitted process > CONPLEX_ALL (14) Mar-23 12:34:26.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: GET_FINAL_METABOLITES_STATIC (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/57/5023ee10166882143a1e04f4172bd7] Mar-23 12:34:26.638 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:26.640 [Task submitter] INFO nextflow.Session - [4f/914e0e] Submitted process > CONPLEX_ALL (15) Mar-23 12:34:34.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: GET_FINAL_METABOLITES_STATIC (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/0e/b1ba678c16290a330b694983921f5c] Mar-23 12:34:34.235 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:34.236 [Task submitter] INFO nextflow.Session - [45/a19ccf] Submitted process > CONPLEX_ALL (16) Mar-23 12:34:37.582 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: GET_FINAL_METABOLITES_STATIC (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/5f/c1a0dc784da101e044346af396812d] Mar-23 12:34:37.597 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:37.598 [Task submitter] INFO nextflow.Session - [38/9d4acc] Submitted process > CONPLEX_ALL (17) Mar-23 12:34:49.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: HUMAN_TRANSFORMER (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9c/1072348f82658bff6118dd98dff95e] Mar-23 12:34:49.051 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:34:49.052 [Task submitter] INFO nextflow.Session - [d1/c7c098] Submitted process > GET_FINAL_METABOLITES_STATIC (18) Mar-23 12:35:01.944 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: GET_FINAL_METABOLITES_STATIC (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d1/c7c098985598b18afe2fe2f36fd599] Mar-23 12:35:01.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:35:01.968 [Task submitter] INFO nextflow.Session - [ec/eb9042] Submitted process > CONPLEX_ALL (18) Mar-23 12:35:16.248 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: HUMAN_TRANSFORMER (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/7f/fffcfc20b885868645588ea0184dec] Mar-23 12:35:16.265 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:35:16.267 [Task submitter] INFO nextflow.Session - [74/02c4c2] Submitted process > GET_FINAL_METABOLITES_STATIC (19) Mar-23 12:35:24.543 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: GET_FINAL_METABOLITES_STATIC (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/74/02c4c29cbca0ab154f2bf45979058b] Mar-23 12:35:24.572 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:35:24.573 [Task submitter] INFO nextflow.Session - [d3/59e768] Submitted process > CONPLEX_ALL (19) Mar-23 12:35:24.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: HUMAN_TRANSFORMER (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/02/5069402b2776a3ea94e1260994e70e] Mar-23 12:35:24.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:35:24.726 [Task submitter] INFO nextflow.Session - [08/e2ff02] Submitted process > GET_FINAL_METABOLITES_STATIC (20) Mar-23 12:35:39.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: GET_FINAL_METABOLITES_STATIC (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/08/e2ff02a72b3bc58a7dc651a408e61e] Mar-23 12:35:39.581 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:35:39.582 [Task submitter] INFO nextflow.Session - [0f/05554b] Submitted process > CONPLEX_ALL (20) Mar-23 12:36:08.369 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: HUMAN_TRANSFORMER (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/20/1a7d4d52fa8531ca500e62fff149e0] Mar-23 12:36:08.387 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:08.388 [Task submitter] INFO nextflow.Session - [59/20c57b] Submitted process > GET_FINAL_METABOLITES_STATIC (21) Mar-23 12:36:08.530 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: HUMAN_TRANSFORMER (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/30/24835fc80891aeb227cb5f6bee92b6] Mar-23 12:36:08.555 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:08.556 [Task submitter] INFO nextflow.Session - [a4/5d15d8] Submitted process > GET_FINAL_METABOLITES_STATIC (22) Mar-23 12:36:28.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: GET_FINAL_METABOLITES_STATIC (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/59/20c57b919b048249caea887376f7cf] Mar-23 12:36:28.269 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:28.270 [Task submitter] INFO nextflow.Session - [05/1a80de] Submitted process > CONPLEX_ALL (21) Mar-23 12:36:28.294 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: GET_FINAL_METABOLITES_STATIC (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a4/5d15d8c541c82fc8fd5c20a4ecfa6f] Mar-23 12:36:28.318 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:28.319 [Task submitter] INFO nextflow.Session - [bb/6e26ea] Submitted process > CONPLEX_ALL (22) Mar-23 12:36:34.979 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: CONPLEX_ALL (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a5/23b628f89e2a7835409a6c7d718387] Mar-23 12:36:35.019 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:35.020 [Task submitter] INFO nextflow.Session - [13/14251c] Submitted process > TISSUE_DISTRIBUTION (1) Mar-23 12:36:35.028 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:35.029 [Task submitter] INFO nextflow.Session - [2d/e5bbd5] Submitted process > BIO_METRICS (1) Mar-23 12:36:35.049 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:36:35.050 [Task submitter] INFO nextflow.Session - [e4/66e3d5] Submitted process > NETWORK_ENRICHMENT (1) Mar-23 12:36:45.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 34 -- submitted tasks are shown below ~> TaskHandler[id: 2; name: HUMAN_TRANSFORMER (2); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/f7/f16540761aee41c7248ad1fe8f3eee] ~> TaskHandler[id: 16; name: HUMAN_TRANSFORMER (16); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/f1/b1e309add0f1cd88797c7527fdf6f3] ~> TaskHandler[id: 4; name: HUMAN_TRANSFORMER (4); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/f3/2167e6d747c6ad3334197c296e88d9] ~> TaskHandler[id: 9; name: HUMAN_TRANSFORMER (9); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/35/b8dc93d08d0110ce4b508b43b52dff] ~> TaskHandler[id: 7; name: HUMAN_TRANSFORMER (7); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ce/eac613e5ebba4a75ecd7d8352f7c99] ~> TaskHandler[id: 10; name: HUMAN_TRANSFORMER (10); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/de/d2b3dae152dc4064dd3caf84986f07] ~> TaskHandler[id: 29; name: HUMAN_TRANSFORMER (29); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/d7/93d38d4103afc3e0a87aa8fb1ae84d] ~> TaskHandler[id: 12; name: HUMAN_TRANSFORMER (12); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/d6/937a35d19297dce8b144bc2aa88b04] ~> TaskHandler[id: 30; name: HUMAN_TRANSFORMER (30); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ba/11e874c2fb4e51162424748812e93d] ~> TaskHandler[id: 3; name: HUMAN_TRANSFORMER (3); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/f8/10a61c18a03652d1b03d448e2b9f99] .. remaining tasks omitted. Mar-23 12:37:00.095 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: TISSUE_DISTRIBUTION (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/13/14251cf5407e48cccef51699b56e1d] Mar-23 12:37:01.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: NETWORK_ENRICHMENT (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e4/66e3d504c2bd118ecb08f6aefd542d] Mar-23 12:37:13.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: BIO_METRICS (1); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/2d/e5bbd5fc1420d3b5e51dcff10ee00e] Mar-23 12:37:20.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: HUMAN_TRANSFORMER (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/de/d2b3dae152dc4064dd3caf84986f07] Mar-23 12:37:20.152 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:20.154 [Task submitter] INFO nextflow.Session - [eb/c954be] Submitted process > GET_FINAL_METABOLITES_STATIC (23) Mar-23 12:37:25.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: GET_FINAL_METABOLITES_STATIC (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/eb/c954bec177186d1d22d0f840ba29c3] Mar-23 12:37:25.390 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:25.391 [Task submitter] INFO nextflow.Session - [33/07094f] Submitted process > CONPLEX_ALL (23) Mar-23 12:37:29.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: HUMAN_TRANSFORMER (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/35/b8dc93d08d0110ce4b508b43b52dff] Mar-23 12:37:29.684 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:29.685 [Task submitter] INFO nextflow.Session - [01/bec09d] Submitted process > GET_FINAL_METABOLITES_STATIC (24) Mar-23 12:37:35.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: GET_FINAL_METABOLITES_STATIC (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/01/bec09d3e94eb30f39b777429901529] Mar-23 12:37:35.176 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:35.176 [Task submitter] INFO nextflow.Session - [9e/eb3ea1] Submitted process > CONPLEX_ALL (24) Mar-23 12:37:37.560 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: CONPLEX_ALL (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/69/3bf75df83d44f572f4b434c2c06735] Mar-23 12:37:37.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:37.579 [Task submitter] INFO nextflow.Session - [4f/f22d29] Submitted process > NETWORK_ENRICHMENT (2) Mar-23 12:37:37.584 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:37.584 [Task submitter] INFO nextflow.Session - [29/a97dbb] Submitted process > TISSUE_DISTRIBUTION (2) Mar-23 12:37:37.590 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:37.590 [Task submitter] INFO nextflow.Session - [d6/3961cf] Submitted process > BIO_METRICS (2) Mar-23 12:37:48.785 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: CONPLEX_ALL (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/11/41fa416225698c2a4a337496069fbe] Mar-23 12:37:48.807 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:48.807 [Task submitter] INFO nextflow.Session - [f3/d557be] Submitted process > TISSUE_DISTRIBUTION (3) Mar-23 12:37:48.815 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:48.816 [Task submitter] INFO nextflow.Session - [50/5fcb68] Submitted process > NETWORK_ENRICHMENT (3) Mar-23 12:37:48.825 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:48.826 [Task submitter] INFO nextflow.Session - [95/4f5cd2] Submitted process > BIO_METRICS (3) Mar-23 12:37:48.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: CONPLEX_ALL (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/dd/50d7305b7f7abb66d81414f76920cb] Mar-23 12:37:49.286 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:49.287 [Task submitter] INFO nextflow.Session - [3a/c26113] Submitted process > NETWORK_ENRICHMENT (4) Mar-23 12:37:49.296 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:49.297 [Task submitter] INFO nextflow.Session - [f0/c644ac] Submitted process > BIO_METRICS (4) Mar-23 12:37:49.316 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:49.317 [Task submitter] INFO nextflow.Session - [b3/5cf0e3] Submitted process > TISSUE_DISTRIBUTION (4) Mar-23 12:37:51.027 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: CONPLEX_ALL (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f1/5e18e2e5c18fe745b07b36bec151d6] Mar-23 12:37:51.044 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:51.045 [Task submitter] INFO nextflow.Session - [d6/b41e0c] Submitted process > TISSUE_DISTRIBUTION (5) Mar-23 12:37:51.050 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:51.050 [Task submitter] INFO nextflow.Session - [24/ff2c47] Submitted process > NETWORK_ENRICHMENT (5) Mar-23 12:37:51.056 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:51.056 [Task submitter] INFO nextflow.Session - [93/3e3be9] Submitted process > BIO_METRICS (5) Mar-23 12:37:53.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: CONPLEX_ALL (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/47/e3689cad62beb34489586494b2cbaf] Mar-23 12:37:53.736 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:53.737 [Task submitter] INFO nextflow.Session - [c0/371e2e] Submitted process > NETWORK_ENRICHMENT (6) Mar-23 12:37:53.749 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:53.750 [Task submitter] INFO nextflow.Session - [06/c8de2a] Submitted process > TISSUE_DISTRIBUTION (6) Mar-23 12:37:53.765 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:37:53.766 [Task submitter] INFO nextflow.Session - [ad/3874d7] Submitted process > BIO_METRICS (6) Mar-23 12:38:01.136 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: CONPLEX_ALL (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/2b/1f832e20c7d01f6d40033975ca1a15] Mar-23 12:38:01.153 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:01.154 [Task submitter] INFO nextflow.Session - [07/6783cd] Submitted process > TISSUE_DISTRIBUTION (7) Mar-23 12:38:01.160 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:01.161 [Task submitter] INFO nextflow.Session - [b2/3de5d2] Submitted process > NETWORK_ENRICHMENT (7) Mar-23 12:38:01.169 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:01.170 [Task submitter] INFO nextflow.Session - [49/9986ab] Submitted process > BIO_METRICS (7) Mar-23 12:38:03.159 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: CONPLEX_ALL (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8a/d9678534e279927c670d8e3cbc76dd] Mar-23 12:38:03.160 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: CONPLEX_ALL (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/31/8a1dcdbe63608cb636165b802ba3ee] Mar-23 12:38:03.178 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.179 [Task submitter] INFO nextflow.Session - [22/af8d38] Submitted process > TISSUE_DISTRIBUTION (9) Mar-23 12:38:03.192 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.193 [Task submitter] INFO nextflow.Session - [0c/31da68] Submitted process > TISSUE_DISTRIBUTION (8) Mar-23 12:38:03.202 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.203 [Task submitter] INFO nextflow.Session - [7b/9bfa0d] Submitted process > NETWORK_ENRICHMENT (8) Mar-23 12:38:03.212 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.212 [Task submitter] INFO nextflow.Session - [e8/8b5576] Submitted process > NETWORK_ENRICHMENT (9) Mar-23 12:38:03.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.222 [Task submitter] INFO nextflow.Session - [44/6aa7bc] Submitted process > BIO_METRICS (9) Mar-23 12:38:03.230 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:03.231 [Task submitter] INFO nextflow.Session - [11/bd53f9] Submitted process > BIO_METRICS (8) Mar-23 12:38:06.801 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: CONPLEX_ALL (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/de/729b4378fdd22d1e8923d20d20b68f] Mar-23 12:38:06.816 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:06.817 [Task submitter] INFO nextflow.Session - [90/dbf361] Submitted process > NETWORK_ENRICHMENT (10) Mar-23 12:38:06.821 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:06.821 [Task submitter] INFO nextflow.Session - [54/ebab16] Submitted process > TISSUE_DISTRIBUTION (10) Mar-23 12:38:06.827 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:06.827 [Task submitter] INFO nextflow.Session - [9d/f715d0] Submitted process > BIO_METRICS (10) Mar-23 12:38:13.153 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: CONPLEX_ALL (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9a/2fecc9ed2b4eba73680416b03cb2a6] Mar-23 12:38:13.172 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:13.173 [Task submitter] INFO nextflow.Session - [e5/8cf296] Submitted process > TISSUE_DISTRIBUTION (11) Mar-23 12:38:13.177 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:13.178 [Task submitter] INFO nextflow.Session - [80/eb1340] Submitted process > NETWORK_ENRICHMENT (11) Mar-23 12:38:13.183 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:13.183 [Task submitter] INFO nextflow.Session - [3b/8d8bae] Submitted process > BIO_METRICS (11) Mar-23 12:38:21.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: NETWORK_ENRICHMENT (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4f/f22d295989de10b2dfc29f2c1e6f66] Mar-23 12:38:31.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: CONPLEX_ALL (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/89/e57fd5f026ab500a7afd27b1efbc59] Mar-23 12:38:31.148 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:31.149 [Task submitter] INFO nextflow.Session - [23/e0edb4] Submitted process > TISSUE_DISTRIBUTION (12) Mar-23 12:38:31.157 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:31.157 [Task submitter] INFO nextflow.Session - [01/ccfeaf] Submitted process > NETWORK_ENRICHMENT (12) Mar-23 12:38:31.165 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:31.165 [Task submitter] INFO nextflow.Session - [be/1a62f0] Submitted process > BIO_METRICS (12) Mar-23 12:38:35.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: CONPLEX_ALL (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/27/4e94a8b156b5b5b67d4cb0e08f0410] Mar-23 12:38:35.655 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:35.655 [Task submitter] INFO nextflow.Session - [df/37378b] Submitted process > TISSUE_DISTRIBUTION (13) Mar-23 12:38:35.659 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:35.660 [Task submitter] INFO nextflow.Session - [ae/161ea0] Submitted process > NETWORK_ENRICHMENT (13) Mar-23 12:38:35.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:35.665 [Task submitter] INFO nextflow.Session - [9a/2588bd] Submitted process > BIO_METRICS (13) Mar-23 12:38:38.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: CONPLEX_ALL (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4f/914e0ed20b550030977102ec634240] Mar-23 12:38:38.558 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:38.558 [Task submitter] INFO nextflow.Session - [bb/e5559b] Submitted process > TISSUE_DISTRIBUTION (14) Mar-23 12:38:38.567 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:38.568 [Task submitter] INFO nextflow.Session - [da/58f57a] Submitted process > NETWORK_ENRICHMENT (14) Mar-23 12:38:38.576 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:38.577 [Task submitter] INFO nextflow.Session - [41/44f65d] Submitted process > BIO_METRICS (14) Mar-23 12:38:44.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: CONPLEX_ALL (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/6b/d6191a21da8e951e3b5e3fe4777c19] Mar-23 12:38:44.217 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:44.217 [Task submitter] INFO nextflow.Session - [2a/b7677d] Submitted process > BIO_METRICS (15) Mar-23 12:38:44.222 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:44.222 [Task submitter] INFO nextflow.Session - [74/ab9e37] Submitted process > TISSUE_DISTRIBUTION (15) Mar-23 12:38:44.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:44.233 [Task submitter] INFO nextflow.Session - [15/d4d10b] Submitted process > NETWORK_ENRICHMENT (15) Mar-23 12:38:49.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: CONPLEX_ALL (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/38/9d4acc90f36d106b7cac368917e550] Mar-23 12:38:49.361 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:49.361 [Task submitter] INFO nextflow.Session - [4c/876912] Submitted process > BIO_METRICS (16) Mar-23 12:38:49.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:49.369 [Task submitter] INFO nextflow.Session - [77/9891c5] Submitted process > TISSUE_DISTRIBUTION (16) Mar-23 12:38:49.477 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:49.478 [Task submitter] INFO nextflow.Session - [6b/fdd0b6] Submitted process > NETWORK_ENRICHMENT (16) Mar-23 12:38:51.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: CONPLEX_ALL (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/45/a19ccfb8ec236e0945dbed55042d80] Mar-23 12:38:51.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:51.261 [Task submitter] INFO nextflow.Session - [33/88746a] Submitted process > BIO_METRICS (17) Mar-23 12:38:51.272 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:51.272 [Task submitter] INFO nextflow.Session - [a7/3ea963] Submitted process > TISSUE_DISTRIBUTION (17) Mar-23 12:38:51.277 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:51.277 [Task submitter] INFO nextflow.Session - [16/232012] Submitted process > NETWORK_ENRICHMENT (17) Mar-23 12:38:54.493 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: NETWORK_ENRICHMENT (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/3a/c26113bb0d9cbc2cd6ffa649e984bb] Mar-23 12:38:55.975 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: HUMAN_TRANSFORMER (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f3/2167e6d747c6ad3334197c296e88d9] Mar-23 12:38:55.990 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:38:55.990 [Task submitter] INFO nextflow.Session - [95/f2bdb4] Submitted process > GET_FINAL_METABOLITES_STATIC (25) Mar-23 12:39:03.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: NETWORK_ENRICHMENT (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/c0/371e2e1eb6c520d6cbd8551d527bbf] Mar-23 12:39:04.694 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: NETWORK_ENRICHMENT (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/24/ff2c475fceb977db4d2b5997a021aa] Mar-23 12:39:05.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: HUMAN_TRANSFORMER (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ce/eac613e5ebba4a75ecd7d8352f7c99] Mar-23 12:39:05.835 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:05.836 [Task submitter] INFO nextflow.Session - [51/532018] Submitted process > GET_FINAL_METABOLITES_STATIC (26) Mar-23 12:39:10.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 99; name: NETWORK_ENRICHMENT (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/b2/3de5d2d296ef7d0cb0e0efd1b8bfa9] Mar-23 12:39:10.121 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 105; name: NETWORK_ENRICHMENT (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e8/8b5576e0a0da896d8c4563708a6349] Mar-23 12:39:10.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: NETWORK_ENRICHMENT (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/50/5fcb68e7c6d0ba17c6ac0d933c1bb0] Mar-23 12:39:13.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: CONPLEX_ALL (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ec/eb90424872ea2ef085458b17b9d492] Mar-23 12:39:13.334 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:13.339 [Task submitter] INFO nextflow.Session - [07/eb3846] Submitted process > TISSUE_DISTRIBUTION (18) Mar-23 12:39:13.348 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:13.348 [Task submitter] INFO nextflow.Session - [71/d6e25b] Submitted process > BIO_METRICS (18) Mar-23 12:39:13.360 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:13.361 [Task submitter] INFO nextflow.Session - [3e/2c8de8] Submitted process > NETWORK_ENRICHMENT (18) Mar-23 12:39:31.597 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 108; name: NETWORK_ENRICHMENT (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/90/dbf3618498e513aac253cd058fd607] Mar-23 12:39:34.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: HUMAN_TRANSFORMER (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f8/10a61c18a03652d1b03d448e2b9f99] Mar-23 12:39:34.665 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:34.665 [Task submitter] INFO nextflow.Session - [33/a93fae] Submitted process > GET_FINAL_METABOLITES_STATIC (27) Mar-23 12:39:35.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 102; name: NETWORK_ENRICHMENT (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/7b/9bfa0d7db2e92177e7ac89f660ddcf] Mar-23 12:39:35.931 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 111; name: NETWORK_ENRICHMENT (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/80/eb1340f1819de2da6c04fc667c0862] Mar-23 12:39:36.507 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 114; name: NETWORK_ENRICHMENT (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/01/ccfeaf7ba27e6a72be85662f791d0c] Mar-23 12:39:39.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 132; name: GET_FINAL_METABOLITES_STATIC (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/95/f2bdb4530d0ac3c1f3ff00f2e5d9d1] Mar-23 12:39:39.190 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:39.190 [Task submitter] INFO nextflow.Session - [08/033ef2] Submitted process > CONPLEX_ALL (25) Mar-23 12:39:41.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 133; name: GET_FINAL_METABOLITES_STATIC (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/51/53201879a33a087d8def46956e30ef] Mar-23 12:39:41.767 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:41.767 [Task submitter] INFO nextflow.Session - [2e/5eca88] Submitted process > CONPLEX_ALL (26) Mar-23 12:39:43.198 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: HUMAN_TRANSFORMER (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f7/f16540761aee41c7248ad1fe8f3eee] Mar-23 12:39:43.215 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:43.215 [Task submitter] INFO nextflow.Session - [5e/fd8e5e] Submitted process > GET_FINAL_METABOLITES_STATIC (28) Mar-23 12:39:46.363 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 123; name: NETWORK_ENRICHMENT (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/15/d4d10b05f38730d049401c5fe85786] Mar-23 12:39:47.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 118; name: NETWORK_ENRICHMENT (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ae/161ea0024d53dc3bfd63e24b85f039] Mar-23 12:39:49.774 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 128; name: NETWORK_ENRICHMENT (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/6b/fdd0b657c77c21dc5e2c9c569a1a75] Mar-23 12:39:51.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 135; name: NETWORK_ENRICHMENT (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/3e/2c8de8d100be5dcb969e5862c56c36] Mar-23 12:39:51.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 120; name: NETWORK_ENRICHMENT (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/da/58f57a81f0b6279a3662cef7c8b069] Mar-23 12:39:51.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 130; name: NETWORK_ENRICHMENT (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/16/232012a2858c1b774c7ff8dd8ff8a6] Mar-23 12:39:53.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: TISSUE_DISTRIBUTION (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/29/a97dbb292f4ded621fbc410922dd16] Mar-23 12:39:57.351 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: CONPLEX_ALL (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d3/59e76867961a8af5b324f9dd41e8ca] Mar-23 12:39:57.368 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:57.368 [Task submitter] INFO nextflow.Session - [43/7b1489] Submitted process > NETWORK_ENRICHMENT (19) Mar-23 12:39:57.373 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:57.373 [Task submitter] INFO nextflow.Session - [20/365d8d] Submitted process > TISSUE_DISTRIBUTION (19) Mar-23 12:39:57.379 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:57.379 [Task submitter] INFO nextflow.Session - [3a/83663f] Submitted process > BIO_METRICS (19) Mar-23 12:39:59.201 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: HUMAN_TRANSFORMER (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ba/11e874c2fb4e51162424748812e93d] Mar-23 12:39:59.217 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:39:59.218 [Task submitter] INFO nextflow.Session - [da/1d1b41] Submitted process > GET_FINAL_METABOLITES_STATIC (29) Mar-23 12:40:01.754 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: HUMAN_TRANSFORMER (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d7/93d38d4103afc3e0a87aa8fb1ae84d] Mar-23 12:40:01.768 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:01.769 [Task submitter] INFO nextflow.Session - [3a/04d53e] Submitted process > GET_FINAL_METABOLITES_STATIC (30) Mar-23 12:40:03.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: CONPLEX_ALL (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/0f/05554b5b13f98da9dbd653ecd2b483] Mar-23 12:40:03.840 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:03.840 [Task submitter] INFO nextflow.Session - [60/32b570] Submitted process > NETWORK_ENRICHMENT (20) Mar-23 12:40:03.846 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:03.847 [Task submitter] INFO nextflow.Session - [11/082da7] Submitted process > TISSUE_DISTRIBUTION (20) Mar-23 12:40:03.854 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:03.855 [Task submitter] INFO nextflow.Session - [dc/26dfd8] Submitted process > BIO_METRICS (20) Mar-23 12:40:14.513 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 137; name: GET_FINAL_METABOLITES_STATIC (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/33/a93fae31481f246b097b2aa33dfd28] Mar-23 12:40:14.533 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:14.534 [Task submitter] INFO nextflow.Session - [17/80ca83] Submitted process > CONPLEX_ALL (27) Mar-23 12:40:14.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 140; name: GET_FINAL_METABOLITES_STATIC (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/5e/fd8e5e54cb4f183b2ce8d52af21e94] Mar-23 12:40:14.562 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:14.563 [Task submitter] INFO nextflow.Session - [b1/057b65] Submitted process > CONPLEX_ALL (28) Mar-23 12:40:16.079 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: BIO_METRICS (2); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d6/3961cfb71a9ca8371fe4115528c8b5] Mar-23 12:40:30.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 143; name: NETWORK_ENRICHMENT (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/43/7b1489d70ac412e0cab45c8f67df8c] Mar-23 12:40:32.161 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 148; name: NETWORK_ENRICHMENT (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/60/32b570e65114e89cc469b5c9bb57ba] Mar-23 12:40:35.079 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 145; name: GET_FINAL_METABOLITES_STATIC (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/3a/04d53e8b7d32e0e1abcd6974cd75ad] Mar-23 12:40:35.099 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:35.099 [Task submitter] INFO nextflow.Session - [0f/26ca05] Submitted process > CONPLEX_ALL (29) Mar-23 12:40:35.166 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 144; name: GET_FINAL_METABOLITES_STATIC (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/da/1d1b412830b1587ece28bac11c9469] Mar-23 12:40:35.184 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:40:35.185 [Task submitter] INFO nextflow.Session - [e6/bffd78] Submitted process > CONPLEX_ALL (30) Mar-23 12:40:48.469 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: TISSUE_DISTRIBUTION (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f3/d557beb05b9a2f2f94c9bbf0699f74] Mar-23 12:41:11.219 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: TISSUE_DISTRIBUTION (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d6/b41e0c0e6da6d488e749655f7e3c07] Mar-23 12:41:21.212 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: BIO_METRICS (5); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/93/3e3be92e196d43903b3ab0ab53e533] Mar-23 12:41:23.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: CONPLEX_ALL (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/bb/6e26ea2dad5145467b34925806585b] Mar-23 12:41:23.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:23.456 [Task submitter] INFO nextflow.Session - [7b/fb352b] Submitted process > TISSUE_DISTRIBUTION (21) Mar-23 12:41:23.460 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:23.461 [Task submitter] INFO nextflow.Session - [fb/887e51] Submitted process > NETWORK_ENRICHMENT (21) Mar-23 12:41:23.466 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:23.466 [Task submitter] INFO nextflow.Session - [4f/7fe0cb] Submitted process > BIO_METRICS (21) Mar-23 12:41:26.018 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: TISSUE_DISTRIBUTION (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/b3/5cf0e3f2e08e8e9e60a13940ff9a4a] Mar-23 12:41:27.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: CONPLEX_ALL (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/05/1a80de9a1ebeace669f6f6012c9d72] Mar-23 12:41:27.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:27.227 [Task submitter] INFO nextflow.Session - [57/539445] Submitted process > TISSUE_DISTRIBUTION (22) Mar-23 12:41:27.232 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:27.232 [Task submitter] INFO nextflow.Session - [99/22ebf4] Submitted process > NETWORK_ENRICHMENT (22) Mar-23 12:41:27.239 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:41:27.239 [Task submitter] INFO nextflow.Session - [73/7f0338] Submitted process > BIO_METRICS (22) Mar-23 12:41:33.288 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: BIO_METRICS (3); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/95/4f5cd24f3efc2e219247618f44651f] Mar-23 12:41:40.921 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 100; name: TISSUE_DISTRIBUTION (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/07/6783cdc83d5ffb569734dddb53b723] Mar-23 12:41:44.186 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: BIO_METRICS (4); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f0/c644acab981f0e2a200a49d011d24a] Mar-23 12:41:45.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 45 -- submitted tasks are shown below ~> TaskHandler[id: 16; name: HUMAN_TRANSFORMER (16); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/f1/b1e309add0f1cd88797c7527fdf6f3] ~> TaskHandler[id: 12; name: HUMAN_TRANSFORMER (12); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/d6/937a35d19297dce8b144bc2aa88b04] ~> TaskHandler[id: 81; name: CONPLEX_ALL (23); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/33/07094f1b16e171068beb4d45f0d323] ~> TaskHandler[id: 83; name: CONPLEX_ALL (24); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/9e/eb3ea15b69c05a2e60cd0a088cf8c1] ~> TaskHandler[id: 97; name: TISSUE_DISTRIBUTION (6); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/06/c8de2ac82664b8e4ea4fa2d0ace04c] ~> TaskHandler[id: 98; name: BIO_METRICS (6); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ad/3874d7773511b299a0cd2ac9667439] ~> TaskHandler[id: 101; name: BIO_METRICS (7); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/49/9986abc0e786727dd60bc1e7bc9e1b] ~> TaskHandler[id: 106; name: TISSUE_DISTRIBUTION (9); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/22/af8d38620c99efde756aac21397250] ~> TaskHandler[id: 103; name: TISSUE_DISTRIBUTION (8); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/0c/31da68f73ca6075ec6eb53e51150df] ~> TaskHandler[id: 107; name: BIO_METRICS (9); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/44/6aa7bc6c7377f12a92c16187d56a9b] .. remaining tasks omitted. Mar-23 12:41:48.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 103; name: TISSUE_DISTRIBUTION (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/0c/31da68f73ca6075ec6eb53e51150df] Mar-23 12:41:57.796 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 157; name: NETWORK_ENRICHMENT (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/99/22ebf44395545226bf7ec246f27fc1] Mar-23 12:41:57.812 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 154; name: NETWORK_ENRICHMENT (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/fb/887e5104f41ba7c6ada83e6273068a] Mar-23 12:42:02.049 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: BIO_METRICS (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ad/3874d7773511b299a0cd2ac9667439] Mar-23 12:42:03.645 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 104; name: BIO_METRICS (8); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/11/bd53f98856474786ea24da75e2ee1b] Mar-23 12:42:06.492 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 106; name: TISSUE_DISTRIBUTION (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/22/af8d38620c99efde756aac21397250] Mar-23 12:42:15.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: CONPLEX_ALL (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/33/07094f1b16e171068beb4d45f0d323] Mar-23 12:42:15.880 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:15.881 [Task submitter] INFO nextflow.Session - [81/57b8bf] Submitted process > BIO_METRICS (23) Mar-23 12:42:15.885 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:15.885 [Task submitter] INFO nextflow.Session - [e0/27ecec] Submitted process > TISSUE_DISTRIBUTION (23) Mar-23 12:42:15.889 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:15.889 [Task submitter] INFO nextflow.Session - [30/367e53] Submitted process > NETWORK_ENRICHMENT (23) Mar-23 12:42:17.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 101; name: BIO_METRICS (7); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/49/9986abc0e786727dd60bc1e7bc9e1b] Mar-23 12:42:20.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 109; name: TISSUE_DISTRIBUTION (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/54/ebab16dd4258d0ee83b4afa0f14f0e] Mar-23 12:42:22.679 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 107; name: BIO_METRICS (9); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/44/6aa7bc6c7377f12a92c16187d56a9b] Mar-23 12:42:27.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 139; name: CONPLEX_ALL (26); status: COMPLETED; exit: 137; error: -; workDir: /data/bugra/digital_trials/work/2e/5eca88b0106f9b71dfbcdc4bd48329] Mar-23 12:42:27.352 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=CONPLEX_ALL (26); work-dir=/data/bugra/digital_trials/work/2e/5eca88b0106f9b71dfbcdc4bd48329 error [nextflow.exception.ProcessFailedException]: Process `CONPLEX_ALL (26)` terminated with an error exit status (137) Mar-23 12:42:27.369 [TaskFinalizer-4] INFO nextflow.processor.TaskProcessor - [2e/5eca88] NOTE: Process `CONPLEX_ALL (26)` terminated with an error exit status (137) -- Execution is retried (1) Mar-23 12:42:27.381 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:27.381 [Task submitter] INFO nextflow.Session - [b0/f4117d] Re-submitted process > CONPLEX_ALL (26) Mar-23 12:42:33.874 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 152; name: CONPLEX_ALL (30); status: COMPLETED; exit: 137; error: -; workDir: /data/bugra/digital_trials/work/e6/bffd78b931d61bc7d3d448de37dd5d] Mar-23 12:42:33.876 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=CONPLEX_ALL (30); work-dir=/data/bugra/digital_trials/work/e6/bffd78b931d61bc7d3d448de37dd5d error [nextflow.exception.ProcessFailedException]: Process `CONPLEX_ALL (30)` terminated with an error exit status (137) Mar-23 12:42:33.877 [TaskFinalizer-5] INFO nextflow.processor.TaskProcessor - [e6/bffd78] NOTE: Process `CONPLEX_ALL (30)` terminated with an error exit status (137) -- Execution is retried (1) Mar-23 12:42:33.888 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:33.888 [Task submitter] INFO nextflow.Session - [7d/fdb02c] Re-submitted process > CONPLEX_ALL (30) Mar-23 12:42:36.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 150; name: CONPLEX_ALL (28); status: COMPLETED; exit: 137; error: -; workDir: /data/bugra/digital_trials/work/b1/057b65a97a41bbe473ee2f46eb9b40] Mar-23 12:42:36.893 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=CONPLEX_ALL (28); work-dir=/data/bugra/digital_trials/work/b1/057b65a97a41bbe473ee2f46eb9b40 error [nextflow.exception.ProcessFailedException]: Process `CONPLEX_ALL (28)` terminated with an error exit status (137) Mar-23 12:42:36.894 [TaskFinalizer-6] INFO nextflow.processor.TaskProcessor - [b1/057b65] NOTE: Process `CONPLEX_ALL (28)` terminated with an error exit status (137) -- Execution is retried (1) Mar-23 12:42:36.902 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:36.903 [Task submitter] INFO nextflow.Session - [8a/d50b0a] Re-submitted process > CONPLEX_ALL (28) Mar-23 12:42:38.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 149; name: CONPLEX_ALL (27); status: COMPLETED; exit: 137; error: -; workDir: /data/bugra/digital_trials/work/17/80ca834858cd7e184c1bda62c00603] Mar-23 12:42:38.764 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=CONPLEX_ALL (27); work-dir=/data/bugra/digital_trials/work/17/80ca834858cd7e184c1bda62c00603 error [nextflow.exception.ProcessFailedException]: Process `CONPLEX_ALL (27)` terminated with an error exit status (137) Mar-23 12:42:38.765 [TaskFinalizer-8] INFO nextflow.processor.TaskProcessor - [17/80ca83] NOTE: Process `CONPLEX_ALL (27)` terminated with an error exit status (137) -- Execution is retried (1) Mar-23 12:42:38.770 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:38.770 [Task submitter] INFO nextflow.Session - [34/389a02] Re-submitted process > CONPLEX_ALL (27) Mar-23 12:42:38.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 117; name: TISSUE_DISTRIBUTION (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/df/37378b71bdf76c2878dd171863bb83] Mar-23 12:42:45.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 134; name: TISSUE_DISTRIBUTION (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/07/eb38462f5d9bdba6ad8eb32015e50d] Mar-23 12:42:45.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 110; name: BIO_METRICS (10); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9d/f715d039ac5b83b554f8480c11c08b] Mar-23 12:42:47.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 159; name: NETWORK_ENRICHMENT (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/30/367e53a63fb710ffd441deac10d977] Mar-23 12:42:48.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 115; name: TISSUE_DISTRIBUTION (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/23/e0edb40b343cab6e97f10f55f5ed5a] Mar-23 12:42:49.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: CONPLEX_ALL (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9e/eb3ea15b69c05a2e60cd0a088cf8c1] Mar-23 12:42:49.142 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:49.142 [Task submitter] INFO nextflow.Session - [ca/82ccc0] Submitted process > TISSUE_DISTRIBUTION (24) Mar-23 12:42:49.148 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:49.148 [Task submitter] INFO nextflow.Session - [2c/a4ea8f] Submitted process > BIO_METRICS (24) Mar-23 12:42:49.154 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:49.155 [Task submitter] INFO nextflow.Session - [ba/75b2a6] Submitted process > NETWORK_ENRICHMENT (24) Mar-23 12:42:51.112 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 124; name: TISSUE_DISTRIBUTION (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/74/ab9e376731231ee4d73b8f8e018b03] Mar-23 12:42:53.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 151; name: CONPLEX_ALL (29); status: COMPLETED; exit: 137; error: -; workDir: /data/bugra/digital_trials/work/0f/26ca056cde3d0a0faccc5d4300ad77] Mar-23 12:42:53.009 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=CONPLEX_ALL (29); work-dir=/data/bugra/digital_trials/work/0f/26ca056cde3d0a0faccc5d4300ad77 error [nextflow.exception.ProcessFailedException]: Process `CONPLEX_ALL (29)` terminated with an error exit status (137) Mar-23 12:42:53.009 [TaskFinalizer-5] INFO nextflow.processor.TaskProcessor - [0f/26ca05] NOTE: Process `CONPLEX_ALL (29)` terminated with an error exit status (137) -- Execution is retried (1) Mar-23 12:42:53.019 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:42:53.019 [Task submitter] INFO nextflow.Session - [36/87bdb0] Re-submitted process > CONPLEX_ALL (29) Mar-23 12:42:53.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 113; name: TISSUE_DISTRIBUTION (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e5/8cf2969c5ca16cfee21167ab260e6a] Mar-23 12:42:59.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 119; name: BIO_METRICS (13); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/9a/2588bd738c68f1f0b9c3430ff00ba6] Mar-23 12:43:00.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 121; name: TISSUE_DISTRIBUTION (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/bb/e5559b9c17fe9fe9f8bfe2e025c183] Mar-23 12:43:04.334 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 112; name: BIO_METRICS (11); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/3b/8d8bae39a0214c412b57c1436e3d18] Mar-23 12:43:06.770 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 129; name: TISSUE_DISTRIBUTION (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a7/3ea963b0cb5accd9c0cf7dcef07ca0] Mar-23 12:43:07.775 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 127; name: TISSUE_DISTRIBUTION (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/77/9891c577fca50a494253f4a5120458] Mar-23 12:43:09.983 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 116; name: BIO_METRICS (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/be/1a62f09fbfc5a13f64656527d26476] Mar-23 12:43:11.024 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 125; name: BIO_METRICS (15); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/2a/b7677df131761a1fc65c1ae07cc506] Mar-23 12:43:18.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 167; name: NETWORK_ENRICHMENT (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ba/75b2a67efede49e2757e606a1c8caf] Mar-23 12:43:23.672 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 122; name: BIO_METRICS (14); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/41/44f65ddd2463c35daf1512af64ad53] Mar-23 12:43:25.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 126; name: BIO_METRICS (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4c/8769120a19babc0bd6325e0a971ddf] Mar-23 12:43:31.525 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 136; name: BIO_METRICS (18); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/71/d6e25b32e8710641786734a3527926] Mar-23 12:43:38.096 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: TISSUE_DISTRIBUTION (6); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/06/c8de2ac82664b8e4ea4fa2d0ace04c] Mar-23 12:43:41.450 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 147; name: TISSUE_DISTRIBUTION (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/11/082da7bfa22391d70b7ccec1f21cbe] Mar-23 12:43:57.244 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 131; name: BIO_METRICS (17); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/33/88746ad8a88226e3f9c903ab251a72] Mar-23 12:44:03.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 142; name: TISSUE_DISTRIBUTION (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/20/365d8d2bad0b7a7928b3b5ccb16ef5] Mar-23 12:44:30.557 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: HUMAN_TRANSFORMER (12); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/d6/937a35d19297dce8b144bc2aa88b04] Mar-23 12:44:30.579 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:44:30.580 [Task submitter] INFO nextflow.Session - [45/f1829b] Submitted process > GET_FINAL_METABOLITES_STATIC (31) Mar-23 12:44:37.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 170; name: GET_FINAL_METABOLITES_STATIC (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/45/f1829b25b4f3df485be705cc48b802] Mar-23 12:44:38.097 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:44:38.098 [Task submitter] INFO nextflow.Session - [ab/ae2b82] Submitted process > CONPLEX_ALL (31) Mar-23 12:44:46.347 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 141; name: BIO_METRICS (19); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/3a/83663f248b80abd0bd711b5851e130] Mar-23 12:44:52.756 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 138; name: CONPLEX_ALL (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/08/033ef25b49e18111d147d94fa5e9cc] Mar-23 12:44:52.773 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:44:52.774 [Task submitter] INFO nextflow.Session - [1d/835cc1] Submitted process > TISSUE_DISTRIBUTION (25) Mar-23 12:44:52.780 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:44:52.780 [Task submitter] INFO nextflow.Session - [6b/e16abe] Submitted process > NETWORK_ENRICHMENT (25) Mar-23 12:44:52.787 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:44:52.787 [Task submitter] INFO nextflow.Session - [aa/55bfe8] Submitted process > BIO_METRICS (25) Mar-23 12:44:56.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 146; name: BIO_METRICS (20); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/dc/26dfd877e58d766955e8a73e475a07] Mar-23 12:44:58.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 153; name: TISSUE_DISTRIBUTION (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/7b/fb352b6e09abc1540368c2236e8256] Mar-23 12:45:00.346 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 158; name: TISSUE_DISTRIBUTION (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/57/539445dedec26946d36643db2589db] Mar-23 12:45:01.619 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 172; name: NETWORK_ENRICHMENT (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/6b/e16abeb9a9c0520d86e7f1541b5743] Mar-23 12:45:36.525 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 160; name: TISSUE_DISTRIBUTION (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e0/27ecec03371e5c50a226da16062585] Mar-23 12:46:01.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: HUMAN_TRANSFORMER (16); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f1/b1e309add0f1cd88797c7527fdf6f3] Mar-23 12:46:01.384 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:46:01.385 [Task submitter] INFO nextflow.Session - [0a/d4196d] Submitted process > GET_FINAL_METABOLITES_STATIC (32) Mar-23 12:46:07.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 175; name: GET_FINAL_METABOLITES_STATIC (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/0a/d4196d87e1a8ef468783e1e1c79ce0] Mar-23 12:46:07.922 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:46:07.922 [Task submitter] INFO nextflow.Session - [a5/442c00] Submitted process > CONPLEX_ALL (32) Mar-23 12:46:10.425 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 168; name: TISSUE_DISTRIBUTION (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ca/82ccc0e2a0af7a1bf260340e34c41e] Mar-23 12:46:14.425 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 155; name: BIO_METRICS (21); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4f/7fe0cb8a6e108636ff6e7ed72823dc] Mar-23 12:46:16.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 156; name: BIO_METRICS (22); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/73/7f03385bcff8b67e3e71660f0b2be3] Mar-23 12:46:45.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 11 -- submitted tasks are shown below ~> TaskHandler[id: 161; name: BIO_METRICS (23); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/81/57b8bf8804037a9684d53e7fcbe5b3] ~> TaskHandler[id: 162; name: CONPLEX_ALL (26); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/b0/f4117da8bcb4e3fc730d2c03ba15dd] ~> TaskHandler[id: 163; name: CONPLEX_ALL (30); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/7d/fdb02caa4facf542099ed7099fc3be] ~> TaskHandler[id: 164; name: CONPLEX_ALL (28); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/8a/d50b0a94c90015f90f3e362b3d7d66] ~> TaskHandler[id: 165; name: CONPLEX_ALL (27); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/34/389a021aae6a91d9c31b4617ed5f9b] ~> TaskHandler[id: 166; name: BIO_METRICS (24); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/2c/a4ea8fafbe9245f2e726a094c64255] ~> TaskHandler[id: 169; name: CONPLEX_ALL (29); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/36/87bdb06ca1815d4a2c374961f0b77b] ~> TaskHandler[id: 171; name: CONPLEX_ALL (31); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ab/ae2b82ac588f8923a06cb0eed5c49b] ~> TaskHandler[id: 174; name: TISSUE_DISTRIBUTION (25); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/1d/835cc1e8516441e62d198308716622] ~> TaskHandler[id: 173; name: BIO_METRICS (25); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/aa/55bfe82411e2b1e6eed1e4f477aa67] Mar-23 12:46:58.038 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 162; name: CONPLEX_ALL (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/b0/f4117da8bcb4e3fc730d2c03ba15dd] Mar-23 12:46:58.056 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:46:58.056 [Task submitter] INFO nextflow.Session - [be/3ae495] Submitted process > TISSUE_DISTRIBUTION (26) Mar-23 12:46:58.063 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:46:58.063 [Task submitter] INFO nextflow.Session - [46/111673] Submitted process > NETWORK_ENRICHMENT (26) Mar-23 12:46:58.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:46:58.071 [Task submitter] INFO nextflow.Session - [ea/71f9ff] Submitted process > BIO_METRICS (26) Mar-23 12:47:15.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 161; name: BIO_METRICS (23); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/81/57b8bf8804037a9684d53e7fcbe5b3] Mar-23 12:47:21.919 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 178; name: NETWORK_ENRICHMENT (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/46/111673a303dccfac38753031b1bec3] Mar-23 12:47:23.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 163; name: CONPLEX_ALL (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/7d/fdb02caa4facf542099ed7099fc3be] Mar-23 12:47:23.303 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:23.304 [Task submitter] INFO nextflow.Session - [88/263dd7] Submitted process > TISSUE_DISTRIBUTION (27) Mar-23 12:47:23.311 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:23.311 [Task submitter] INFO nextflow.Session - [22/774136] Submitted process > NETWORK_ENRICHMENT (27) Mar-23 12:47:23.319 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:23.319 [Task submitter] INFO nextflow.Session - [ee/901f77] Submitted process > BIO_METRICS (27) Mar-23 12:47:29.163 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: CONPLEX_ALL (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/34/389a021aae6a91d9c31b4617ed5f9b] Mar-23 12:47:29.185 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:29.185 [Task submitter] INFO nextflow.Session - [31/4d6017] Submitted process > TISSUE_DISTRIBUTION (28) Mar-23 12:47:29.197 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:29.198 [Task submitter] INFO nextflow.Session - [71/4770d2] Submitted process > BIO_METRICS (28) Mar-23 12:47:29.206 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:29.207 [Task submitter] INFO nextflow.Session - [e6/75c16c] Submitted process > NETWORK_ENRICHMENT (28) Mar-23 12:47:35.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 164; name: CONPLEX_ALL (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/8a/d50b0a94c90015f90f3e362b3d7d66] Mar-23 12:47:35.475 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:35.476 [Task submitter] INFO nextflow.Session - [cd/02c261] Submitted process > NETWORK_ENRICHMENT (29) Mar-23 12:47:35.481 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:35.482 [Task submitter] INFO nextflow.Session - [66/756e3b] Submitted process > TISSUE_DISTRIBUTION (29) Mar-23 12:47:35.490 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:35.490 [Task submitter] INFO nextflow.Session - [73/6a98d9] Submitted process > BIO_METRICS (29) Mar-23 12:47:38.389 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 169; name: CONPLEX_ALL (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/36/87bdb06ca1815d4a2c374961f0b77b] Mar-23 12:47:38.404 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:38.405 [Task submitter] INFO nextflow.Session - [56/a7eff7] Submitted process > NETWORK_ENRICHMENT (30) Mar-23 12:47:38.410 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:38.411 [Task submitter] INFO nextflow.Session - [e6/6470b7] Submitted process > BIO_METRICS (30) Mar-23 12:47:38.416 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:47:38.416 [Task submitter] INFO nextflow.Session - [84/87263a] Submitted process > TISSUE_DISTRIBUTION (30) Mar-23 12:47:46.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 166; name: BIO_METRICS (24); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/2c/a4ea8fafbe9245f2e726a094c64255] Mar-23 12:47:57.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 181; name: NETWORK_ENRICHMENT (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/22/7741360aff319d2cc7a86045382efc] Mar-23 12:48:08.279 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 185; name: NETWORK_ENRICHMENT (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e6/75c16cbf79da0b24beceff8e168ca0] Mar-23 12:48:09.527 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 186; name: NETWORK_ENRICHMENT (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/cd/02c261e8fb5efe121619696a80eaa9] Mar-23 12:48:19.727 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 189; name: NETWORK_ENRICHMENT (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/56/a7eff72cc801847e15229fc8c18689] Mar-23 12:48:27.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 174; name: TISSUE_DISTRIBUTION (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/1d/835cc1e8516441e62d198308716622] Mar-23 12:49:53.547 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 173; name: BIO_METRICS (25); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/aa/55bfe82411e2b1e6eed1e4f477aa67] Mar-23 12:50:15.102 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 179; name: TISSUE_DISTRIBUTION (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/be/3ae4956f6f27c011788bb1ac918559] Mar-23 12:50:21.853 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 171; name: CONPLEX_ALL (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ab/ae2b82ac588f8923a06cb0eed5c49b] Mar-23 12:50:21.876 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:21.877 [Task submitter] INFO nextflow.Session - [a7/cd7d1e] Submitted process > NETWORK_ENRICHMENT (31) Mar-23 12:50:21.884 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:21.885 [Task submitter] INFO nextflow.Session - [c1/90656b] Submitted process > TISSUE_DISTRIBUTION (31) Mar-23 12:50:21.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:21.893 [Task submitter] INFO nextflow.Session - [00/9f994b] Submitted process > BIO_METRICS (31) Mar-23 12:50:41.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 180; name: TISSUE_DISTRIBUTION (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/88/263dd77fb345314be930f39cd14482] Mar-23 12:50:45.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 193; name: NETWORK_ENRICHMENT (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a7/cd7d1e33e61aec81febf58824af86a] Mar-23 12:50:50.660 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 176; name: CONPLEX_ALL (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/a5/442c0005dd3b8de416fbc41833aad1] Mar-23 12:50:50.685 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:50.685 [Task submitter] INFO nextflow.Session - [ab/e04a6b] Submitted process > TISSUE_DISTRIBUTION (32) Mar-23 12:50:50.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:50.692 [Task submitter] INFO nextflow.Session - [f4/c186c7] Submitted process > NETWORK_ENRICHMENT (32) Mar-23 12:50:50.699 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-23 12:50:50.700 [Task submitter] INFO nextflow.Session - [4f/1c0edc] Submitted process > BIO_METRICS (32) Mar-23 12:50:57.650 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 190; name: TISSUE_DISTRIBUTION (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/84/87263a9f4c58567a49ffca61693a9d] Mar-23 12:50:59.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 183; name: TISSUE_DISTRIBUTION (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/31/4d60170d7411af2597d44531f936d6] Mar-23 12:51:01.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 187; name: TISSUE_DISTRIBUTION (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/66/756e3b7cedd5360359f276390f6a76] Mar-23 12:51:14.271 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 195; name: NETWORK_ENRICHMENT (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/f4/c186c727624024d8307b91a07ccd87] Mar-23 12:51:45.712 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 9 -- submitted tasks are shown below ~> TaskHandler[id: 177; name: BIO_METRICS (26); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ea/71f9ff3cd694cabbbd2cc9e6fb0f10] ~> TaskHandler[id: 182; name: BIO_METRICS (27); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ee/901f7799c39e4f135cef17a6fb192f] ~> TaskHandler[id: 184; name: BIO_METRICS (28); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/71/4770d26c1683d21b8608dfa37b2007] ~> TaskHandler[id: 188; name: BIO_METRICS (29); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/73/6a98d9dfb6cac2596cfad30611988e] ~> TaskHandler[id: 191; name: BIO_METRICS (30); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/e6/6470b7d646985f5c5c2beb931703b1] ~> TaskHandler[id: 192; name: TISSUE_DISTRIBUTION (31); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/c1/90656b98274556b91bbec9df9b84a4] ~> TaskHandler[id: 194; name: BIO_METRICS (31); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/00/9f994bbf43db001db949e4b5d4aee5] ~> TaskHandler[id: 196; name: TISSUE_DISTRIBUTION (32); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/ab/e04a6b36921f8a90c0ea146cf5304f] ~> TaskHandler[id: 197; name: BIO_METRICS (32); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/4f/1c0edc01e00b16365405f69ec56ac7] Mar-23 12:52:18.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 177; name: BIO_METRICS (26); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ea/71f9ff3cd694cabbbd2cc9e6fb0f10] Mar-23 12:52:43.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 184; name: BIO_METRICS (28); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/71/4770d26c1683d21b8608dfa37b2007] Mar-23 12:52:54.873 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 188; name: BIO_METRICS (29); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/73/6a98d9dfb6cac2596cfad30611988e] Mar-23 12:52:59.195 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 182; name: BIO_METRICS (27); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ee/901f7799c39e4f135cef17a6fb192f] Mar-23 12:53:14.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 191; name: BIO_METRICS (30); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/e6/6470b7d646985f5c5c2beb931703b1] Mar-23 12:55:10.091 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 196; name: TISSUE_DISTRIBUTION (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/ab/e04a6b36921f8a90c0ea146cf5304f] Mar-23 12:56:14.510 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 197; name: BIO_METRICS (32); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/4f/1c0edc01e00b16365405f69ec56ac7] Mar-23 12:56:24.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 192; name: TISSUE_DISTRIBUTION (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/c1/90656b98274556b91bbec9df9b84a4] Mar-23 12:56:45.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below ~> TaskHandler[id: 194; name: BIO_METRICS (31); status: RUNNING; exit: -; error: -; workDir: /data/bugra/digital_trials/work/00/9f994bbf43db001db949e4b5d4aee5] Mar-23 12:58:48.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 194; name: BIO_METRICS (31); status: COMPLETED; exit: 0; error: -; workDir: /data/bugra/digital_trials/work/00/9f994bbf43db001db949e4b5d4aee5] Mar-23 12:58:48.222 [main] DEBUG nextflow.Session - Session await > all processes finished Mar-23 12:58:48.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop Mar-23 12:58:48.318 [main] DEBUG nextflow.Session - Session await > all barriers passed Mar-23 12:58:48.321 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'TaskFinalizer' shutdown completed (hard=false) Mar-23 12:58:48.322 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'PublishDir' shutdown completed (hard=false) Mar-23 12:58:48.339 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=192; failedCount=5; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=5; abortedCount=0; succeedDuration=9h 44m 45s; failedDuration=11m 48s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=62; peakCpus=62; peakMemory=250 GB; ] Mar-23 12:58:48.481 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done Mar-23 12:58:48.552 [main] INFO org.pf4j.AbstractPluginManager - Stop plugin 'nf-tower@1.11.3' Mar-23 12:58:48.552 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-tower Mar-23 12:58:48.553 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false) Mar-23 12:58:48.554 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye