#!/usr/bin/env nextflow

// params.input_tsv = '../sample/in-molecule/test_known_drugs.tsv'   //metabolites.tsv'
params.input_tsv = '../sample/in-molecule/metabolites-rev.tsv'   //metabolites.tsv'
params.input_zarr = '../data/protein_seq.zarr' //mane_all.zarr'

// Include the buildFaissIndex workflow from main.nf
include { METABOLITE_SCREEN } from './main.nf'

workflow {
    
    input_tsv = file(params.input_tsv)
    input_zarr = file(params.input_zarr)
    
    // Call the combined workflow with both inputs
    protein_scores = METABOLITE_SCREEN(input_tsv, input_zarr)
}