# Use the specified Micromamba base image with CUDA 11.7
FROM mambaorg/micromamba:2.1.1


USER root
ARG MAMBA_DOCKERFILE_ACTIVATE=1


RUN micromamba install -y python=3.9 procps-ng pandas numpy && \
    pip install pandas numpy && \
    micromamba clean --all --yes


# Package into python script for running in nextflow
COPY drug_tissue_distribution.py /home/omic/drug_tissue_distribution.py

# Copy reference files
COPY HPA_normal_ihc_data.tsv /home/omic/
COPY MANE_all_transcipts.csv /home/omic/
COPY digital_patient_extract_metrics.py /home/omic/