work
.nextflow
*.ignored
ncbiproteins_seq*

/input/

# Large STRING-DB reference files (baked into Docker image, not needed in git)
app_network/9606.protein.aliases.v12.0.txt
app_network/9606.protein.enrichment.terms.v12.0.txt
app_network/9606.protein.links.detailed.v12.0.txt
app_network/9606.protein.links.v12.0.txt