Olamide Isreal
9e6a16c19b
Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
15 lines
446 B
Plaintext
15 lines
446 B
Plaintext
nextflow.enable.dsl=2
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params.container_borzoi = 'borzoi:latest'
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params.containerOptions = '--gpus all --rm -v /mnt:/mnt'
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params.outdir = '/mnt/OmicNAS/private/old/gabe/borzoi/outputs'
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params.project_name = 'test'
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params.mane = '/Workspace/next/registry/pipelines/digital_patient/MANE.GRCh38.v1.3.update.tsv'
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include {PREDICT_EXPRESSION_NO_MUTATIONS} from './main_no_mutations.nf'
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workflow {
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PREDICT_EXPRESSION_NO_MUTATIONS(params.mane)
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}
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