Olamide Isreal
9e6a16c19b
Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
49 lines
1.5 KiB
YAML
49 lines
1.5 KiB
YAML
services:
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borzoi:
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build:
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context: .
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dockerfile: Dockerfile_borzoi
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image: harbor.cluster.omic.ai/omic/digital-patients/borzoi:latest
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deploy:
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resources:
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reservations:
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devices:
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- driver: nvidia
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count: all
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capabilities: [gpu]
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vcf2prot:
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build:
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context: .
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dockerfile: Dockerfile_vcf2prot
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image: harbor.cluster.omic.ai/omic/digital-patients/vcf2prot:latest
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rna2protexpression:
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build:
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context: .
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dockerfile: Dockerfile_rna2protexpression
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image: harbor.cluster.omic.ai/omic/digital-patients/rna2protexpression:latest
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corto:
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build:
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context: .
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dockerfile: Dockerfile_corto
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image: harbor.cluster.omic.ai/omic/digital-patients/corto:latest
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ecotyper:
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build:
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context: .
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dockerfile: Dockerfile_ecotyper
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image: harbor.cluster.omic.ai/omic/digital-patients/ecotyper:latest
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synthea:
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build:
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context: .
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dockerfile: Dockerfile_synthea
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image: harbor.cluster.omic.ai/omic/digital-patients/synthea:cudf
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vep:
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build:
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context: .
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dockerfile: Dockerfile_vep
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image: harbor.cluster.omic.ai/omic/digital-patients/vep:1.0.0
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volumes:
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- ./app_filter/sample:/sample
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- /data/vep_data:/data
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# export IMAGE_NAME=synthea:cudf && docker tag $IMAGE_NAME harbor.cluster.omic.ai/omic/digital-patients/$IMAGE_NAME && retry_command.sh docker --config ~/.config/bugra push harbor.cluster.omic.ai/omic/digital-patients/$IMAGE_NAME
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