Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
Run command
vep --config vep.ini -i ${input_vcf} -o ${input_vcf.simpleName}_cosmic.vcf
Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
Run command
vep --config vep.ini -i ${input_vcf} -o ${input_vcf.simpleName}_cosmic.vcf