/work
.nextflow
.nextflow.*
sample/
*.swp
*.pid
*.log

# Large files (baked into Docker images or staged to S3)
ensemble_reference.fasta
go_df_work.csv
MANE_transcipts_reference.fasta
reference.fasta
MANE.GRCh38.v1.3.update.tsv
go_term_protein_expression_model.pth
CIBERSORTx-fractionshires/
TPM_NO_MUTATIONS.csv
name_transcipt_map.csv
LM22_sourceGEP_ensg.txt
regulon.rda
impute-me_wget_ukbb_variants.sh
ncbiRefSeq_subset.pickle
prot_subset.pickle
app_filter/Cosmic_GenomeScreensMutant_v103_GRCh38.vcf.gz