nextflow.enable.dsl=2

process RNA2PROTEXPRESSION {
    memory 2.GB
    accelerator 1

    container "${params.container_rna2protexpression}"
    label 'gpu_process'
    //publishDir "${params.outdir_rna2protexpression}", mode: 'copy'
    // debug true
    // maxForks 1
    
    input:
     path borzoi_tpm

    output:
     path "*Protein_Expression_log2.csv", emit: protrin_expression_scores
     
    script:
    """
    . activate rna2protexpresson
    python3 /home/omic/rna2protexpression/rna2protexpression.py --borzoi_ouput ${borzoi_tpm}  
    """
}