nextflow.enable.dsl=2

params.container_borzoi = 'borzoi:latest'
params.containerOptions = '--gpus all --rm -v /mnt:/mnt'
params.outdir = '/mnt/OmicNAS/private/old/gabe/borzoi/outputs'
params.project_name = 'test'

params.mane = '/Workspace/next/registry/pipelines/digital_patient/MANE.GRCh38.v1.3.update.tsv'

include {PREDICT_EXPRESSION_NO_MUTATIONS} from './main_no_mutations.nf'

workflow {
    PREDICT_EXPRESSION_NO_MUTATIONS(params.mane)
}