From de44607dc4145276d10f7984d9299fb79ece5a7b Mon Sep 17 00:00:00 2001
From: Olamide Isreal <olamide@omicmd.com>
Date: Thu, 26 Mar 2026 19:37:19 +0100
Subject: [PATCH] Switch reassemble container to synthea:cudf (known working)

---
 reassemble.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/reassemble.nf b/reassemble.nf
index 08559ab..69df726 100644
--- a/reassemble.nf
+++ b/reassemble.nf
@@ -4,7 +4,7 @@ nextflow.enable.dsl=2
 params.base_dir = '/omic/eureka/digital-patients'
 
 process REASSEMBLE {
-    container 'harbor.cluster.omic.ai/omic/digital-patients/corto:latest'
+    container 'harbor.cluster.omic.ai/omic/digital-patients/synthea:cudf'
     memory '8 GB'
 
     script: