Initial commit: digital-patients pipeline (clean, no large files)

Large reference/model files excluded from repo - to be staged to S3 or baked into Docker images.
2026-03-26 15:15:23 +01:00
commit 9e6a16c19b
45 changed files with 7207 additions and 0 deletions
--- a/.gitmodules
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "ecotyper"]
+	path = ecotyper
+	url = https://gitlab.com/omic/next/registry/tools/ecotyper