18 lines
637 B
Plaintext
Executable File
18 lines
637 B
Plaintext
Executable File
nextflow.enable.dsl=2
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// GLOBAL FPSIM2 PARAMS
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params.container_corto = 'corto:latest'
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params.containerOptions = '--gpus all --rm -v /mnt:/mnt'
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params.outdir = '/mnt/OmicNAS/private/old/gabe/corto/outputs'
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params.project_name = 'test'
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// // INPUTS
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params.TPM = '/data/olamide/corto/corto_metabolite_prediction/20002_1289_female_patient_0_TPM.csv'
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params.regulon = '/data/olamide/corto/corto_metabolite_prediction/regulon.rda'
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//params.TPM_REFERENCE = '/data/olamide/corto/corto_metabolite_prediction/TPM_ENSG_NO_MUTATIONS.csv'
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include {CORTO} from './main.nf'
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workflow {
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CORTO(params.TPM, params.regulon)// , params.TPM_REFERENCE)
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}
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