nextflow.enable.dsl=2

// GLOBAL FPSIM2 PARAMS
params.container_corto = 'corto:latest'
params.containerOptions = '--gpus all --rm -v /mnt:/mnt'
params.outdir = '/mnt/OmicNAS/private/old/gabe/corto/outputs'
params.project_name = 'test'

// // INPUTS
params.TPM = '/data/olamide/corto/corto_metabolite_prediction/20002_1289_female_patient_0_TPM.csv'
params.regulon = '/data/olamide/corto/corto_metabolite_prediction/regulon.rda'
//params.TPM_REFERENCE = '/data/olamide/corto/corto_metabolite_prediction/TPM_ENSG_NO_MUTATIONS.csv'
include {CORTO} from './main.nf'

workflow {
  CORTO(params.TPM, params.regulon)// , params.TPM_REFERENCE)
}