Files
chai-lab/nextflow.config
Olamide Isreal 64a323a486 Use v3 image with transformers 4.44.2 (EsmModel compatible)
Pin transformers<4.45 and use v3 tag to ensure K8s pulls
the corrected image with working EsmModel imports.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-03-16 18:21:46 +01:00

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docker {
enabled = true
}
process {
container = 'harbor.cluster.omic.ai/omic/chai1:v3'
memory = '32 GB'
cpus = 4
}
profiles {
standard {
docker {
temp = 'auto'
runOptions = '--gpus all'
}
}
k8s {
process {
executor = 'k8s'
}
k8s {
storageClaimName = 'eureka-pvc'
storageMountPath = '/omic/eureka'
namespace = 'nextflow'
serviceAccount = 'nextflow'
}
}
k8s_gpu {
process {
executor = 'k8s'
pod = [[nodeSelector: 'nvidia.com/gpu.present=true'], [env: 'NVIDIA_VISIBLE_DEVICES', value: 'all']]
accelerator = [request: 1, type: 'nvidia.com/gpu']
}
k8s {
storageClaimName = 'eureka-pvc'
storageMountPath = '/omic/eureka'
namespace = 'nextflow'
serviceAccount = 'nextflow'
}
}
}