Olamide Isreal f971fd0e21 Initial commit: Chai-1 protein structure prediction pipeline for WES ...

- Nextflow pipeline using chai1 Docker image from Harbor
- S3-based input/output paths (s3://omic/eureka/chai-lab/)
- GPU-accelerated protein folding with MSA support

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

2026-03-16 12:55:08 +01:00

..

__init__.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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example_inputs.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_cif_utils.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_glycans.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_inference_dataset.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_msa_a3m_tokenization.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_msa_preprocess.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_parsing.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

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test_rdkit.py

Initial commit: Chai-1 protein structure prediction pipeline for WES

2026-03-16 12:55:08 +01:00