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chai-lab/ruff.toml
Olamide Isreal f971fd0e21 Initial commit: Chai-1 protein structure prediction pipeline for WES
- Nextflow pipeline using chai1 Docker image from Harbor
- S3-based input/output paths (s3://omic/eureka/chai-lab/)
- GPU-accelerated protein folding with MSA support

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-03-16 12:55:08 +01:00

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TOML
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# move ruff cache outside of worktree
cache-dir = "/tmp/.ruff_chai_cache"
[lint]
extend-select = ["I"]
# jaxtyping requires disabling two following errors
# https://docs.kidger.site/jaxtyping/faq/#flake8-or-ruff-are-throwing-an-error
ignore = ["F821", "F722"]
[lint.isort]
known-first-party = ["chai", "chai_lab"]