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Use dedicated input subdirectory to avoid stale files

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Previous runs left rcsb_pdb_1QGS.fasta in the work dir.
Using s3://omic/eureka/chai1/input/ ensures only our files are picked up.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
This commit is contained in:
Olamide Isreal
2026-03-16 19:54:59 +01:00
parent 64a323a486
commit fdbd7bf863
1 changed files with 1 additions and 1 deletions
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main.nf
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@@ -1,7 +1,7 @@
#!/usr/bin/env nextflow #!/usr/bin/env nextflow
nextflow.enable.dsl=2 nextflow.enable.dsl=2
params.input_dir = 's3://omic/eureka/chai1' params.input_dir = 's3://omic/eureka/chai1/input'
params.outdir = 's3://omic/eureka/chai1/output' params.outdir = 's3://omic/eureka/chai1/output'
params.use_msa = true params.use_msa = true
params.msa_server = 'https://api.colabfold.com' params.msa_server = 'https://api.colabfold.com'