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Initial commit: Chai-1 protein structure prediction pipeline for WES

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- Nextflow pipeline using chai1 Docker image from Harbor
- S3-based input/output paths (s3://omic/eureka/chai-lab/)
- GPU-accelerated protein folding with MSA support

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Olamide Isreal
2026-03-16 12:55:08 +01:00
commit f971fd0e21
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input/growth_hormone_complex.fasta Executable file
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>protein|name=growth-hormone
FPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
>protein|name=growth-hormone-receptor
FSGSEATPGPLIFKWNHHSVFFDGYTSGGLQRFVHLHFGVSNKQLISICRKRANSKEPSSPIVPVPVGGQLLVDCSFRKLSGEGLHTYYYAAGQEEKTSDRSHRHGPGVGSCFRKTFEDGVYQCTARNEGYAYGHSITKSHRTSHQVCSRDGVPVLTENQAHLPEDFKEFTLRLKQKRQLLERGSPAMQDTFPAPSPETTVQEITSQHPGGTESPTVLRVKTEKSHQVYAGLSKYFHYAGQRGLRVLYLHKGESLARGTVTVPVKRDRGVLADRMVEAVDVQRWVGYLRNVYLTGQK