diff --git a/nextflow.config b/nextflow.config index 0b444fa..c62638d 100755 --- a/nextflow.config +++ b/nextflow.config @@ -1,15 +1,18 @@ -aws { - client { - endpoint = 'https://s3.cluster.omic.ai' - s3PathStyleAccess = true - } +docker { + enabled = true +} + +process { + container = 'harbor.cluster.omic.ai/omic/chai1:latest' + memory = '32 GB' + cpus = 4 } profiles { standard { docker { - enabled = true temp = 'auto' + runOptions = '--gpus all' } } @@ -17,9 +20,6 @@ profiles { process { executor = 'k8s' } - docker { - enabled = true - } k8s { storageClaimName = 'eureka-pvc' storageMountPath = '/omic/eureka' @@ -31,12 +31,9 @@ profiles { k8s_gpu { process { executor = 'k8s' - pod = [[nodeSelector: 'nvidia.com/gpu.present=true']] + pod = [[nodeSelector: 'nvidia.com/gpu.present=true'], [env: 'NVIDIA_VISIBLE_DEVICES', value: 'all']] accelerator = [request: 1, type: 'nvidia.com/gpu'] } - docker { - enabled = true - } k8s { storageClaimName = 'eureka-pvc' storageMountPath = '/omic/eureka'