omic/bioemu
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1febdbe11fc9479427cb85ca39bbdd6577560b67
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4 Commits

Author SHA1 Message Date
Olamide Isreal
1febdbe11f Force image pull in k8s profiles to pick up latest image 2026-03-26 16:03:43 +01:00
Olamide Isreal
04a580a3c0 Simplify nextflow.config for WES compatibility 
Remove params block (defined in main.nf) and minimize profiles
to avoid StackOverflowError when WES injects profile.config via -C flag.
 2026-03-26 14:20:32 +01:00
Olamide Isreal
f776745722 Configure bioemu for WES deployment 
- Update main.nf: Harbor container image, PVC mount paths, remove containerOptions and stageInMode
- Update nextflow.config: Add k8s/k8s_gpu profiles, minimal config for WES injection
- Update params.json: Correct paths for eureka PVC
- Update Dockerfile.wes: CUDA base image for GPU support
 2026-03-26 14:11:57 +01:00
olamide24
2cfbf64e92 Add BioEmu Nextflow pipeline implementation 2025-03-04 09:38:55 -08:00